SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43442

Length: 323 nt

UniGene Fasta

>uagpf_v2_unigene43442
CGTCGTGACCTTGGCTGTCACTCCGTTGTGACCTGGTTGTTAGTCTTTTTAATGGACGTGATGCAGTGCATCCTGGTACTGTTTTTATGGCTAAGGTGGACTGTGCATTGCAGGTAAATACAAAATTGTGTGACAGATTTTCTGTTTCTCACTATCCCTTGCTACTCTGGGGTCCACCATCCAAGTTTGCCTTTGGTAGCTGGGAACCTAAGGTGGATAGTGGCATAGAACCAATTGAAGATGCTCGTACAGCTGATCGTCTACTGAAATGGATTAATAAGAAGATTGGAAAGTCATATAGTTTGGACGATGAGAAATTTGAA

Ace file of the UniGene uagpf_v2_unigene43442

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14348	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	thiol oxidoreductase1 [Zea mays] gb\|AAW66880.1\| thiol oxidoreductase [Zea mays] gb\|ACN27863.1\| unknown [Zea mays]	-	-	53%
FL-Next	sp=Sulfhydryl oxidase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	quiescin-sulfhydryl oxidase 2	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thiol oxidase.	EC:1.8.3.2	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	response to cation stress	GO:0043157	Biological Process	70%
Blast2go	positive regulation of potassium ion transport	GO:0043268	Biological Process	70%
Blast2go	transition metal ion binding	GO:0046914	Molecular Function	70%
Blast2go	thiol oxidase activity	GO:0016972	Molecular Function	70%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%
Blast2go	cell wall	GO:0005618	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Erv1/Alr	IPR006863	-	-
Sma3	Cytochrome c domain	IPR009056	-	-
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	ERV/ALR sulphydryl oxidase	IPR017905	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZU40

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 320 aas, your sequence is shorter than subject: 107 - 495

Fln protein: S*PWLSLRCDLVVSLFNGRDAVHPGTVFMAKVDCALQVNTKLCDRFSVSHYPLLLWGPPSKFAFGSWEPKVDSGIEPIEDARTADRLLKWINKKIGKSYSLDDEKFE

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTTGTGACCTGGTTGTTAGTCTTTTTAATGGACGTGATGCAGTGCATCCTGGTACTGTTTTTATGGCTAAGGTGGACTGTGCATTGCAGGTAAATACAAAATTGTGTGACAGATTTTCTGTTTCTCACTATCCCTTGCTACTCTGGGGTCCACCATCCAAGTTTGCCTTTGGTAGCTGGGAACCTAAGGTGGATAGTGGCATAGAACCAATTGAAGATGCTCGTACAGCTGATCGTCTACTGAAATGGATTAATAAGAAGATTGGAAAGTCATATAGTTTGGACGATGAGAAATTTGAA

Fln Alignment:

uagpf_mira_c42820___VVSLFNGRDAVHPGTVFMAKVDCALQVNTKLCDRFSVSHYPLLLWGPPSKFAFGSWEPKVD-SGIEPIEDARTADRLLKWINKKIGKSYSLDDEKFE
Q9ZU40________________VARLFNGPDAIHPGIVLMTRVDCAMKTNTKLCDKFSVSHYPMLFWGPPTKFVSGSWEPKKDKSEILVIDDGRTAERLLNWINKQIGSSYGLDDQKFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain