SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43439

Length: 238 nt

UniGene Fasta

>uagpf_v2_unigene43439
CGTCGTGACCTTGGCTGTCACTCAAGATTTGTTACAAGAAAAGTAACTAGTGTTTGCGGGATCATTTCGGAGGAACATCCTTCGCCTGTTAAGCATTCGCAGAAAACAGGCACGGAGAGTGTAGAGCTAGAAAATACGGGCAAACCAAGTCTTCATCTTCAGTGTCCAGAGGGACGTCAAATTTCATCTATCAAGTTTGCAAGCTTTGGCTCTCCTCAAGGATCATGTGGAGCTTTCC

Ace file of the UniGene uagpf_v2_unigene43439

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6448	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SWF1_VITVI	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	beta-galactosidase 3-like	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	68%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	68%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	68%
Blast2go	Glycosaminoglycan degradation	00531	68%
Blast2go	Metabolic pathways	01100	68%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	68%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	68%
Blast2go	binding	GO:0005488	Molecular Function	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPW7

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 79 - 317

Fln protein: RRDLGCHSRFVTRKVTSVCGIISEEHPSPVKHSQKTGTESVELENTGKPSLHLQCPEGRQISSIKFASFGSPQGSCGAF

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTGTTACAAGAAAAGTAACTAGTGTTTGCGGGATCATTTCGGAGGAACATCCTTCGCCTGTTAAGCATTCGCAGAAAACAGGCACGGAGAGTGTAGAGCTAGAAAATACGGGCAAACCAAGTCTTCATCTTCAGTGTCCAGAGGGACGTCAAATTTCATCTATCAAGTTTGCAAGCTTTGGCTCTCCTCAAGGATCATGTGGAGCTTTCC

Fln Alignment:

uagpf_mira_rep_c42816___VTRKVTSVCGIISEEHPSPVKHSQKTGTESVELENTGKPSLHLQCPEGRQISSIKFASFGSPQGSCGAF
A9NPW7________________LTRSIDSVCAHAFETHPPSIQSWQKTKVNSEVLRENVEPSLQLDCSVGRRISSIKFASFGNPKGVCGNF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain