SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43338

Length: 195 nt

UniGene Fasta

>uagpf_v2_unigene43338
CGTCGTGACCTTGGCTGTCACTCAACTCATCCAAGATCAATCCTAGAAAAATTTGTTCTACTTCTTTCTCCCTTTGCACCACATATAGCTGAAGAGTTATGGCAACGTCTGGGACATGCTGATTCACTTGCATATGAGCCATGGCCAGAGGCCGAAGAGCAGTACCTGAAGGATGATATGATTGTGCTTCCTATT

Ace file of the UniGene uagpf_v2_unigene43338

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41753	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative leucyl-tRNA synthetase [Oryza sativa Japonica Group]	-	-	1.0e-32	62%
FL-Next	tr=Leucyl-tRNA synthetase, putative; Ricinus communis (Castor bean).	-	-	0.0	70%
Blast2go	leucyl-trna synthetase	-	-	3.01292e-34	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	3.01292e-34	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.01292e-34	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.01292e-34	80%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ia	IPR002300	-	-
Sma3	Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial	IPR002302	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding	IPR013155	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, core domain	IPR018165	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RXG5

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 65 - 960

Fln protein: RRDLGCHSTHPRSILEKFVLLLSPFAPHIAEELWQRLGHADSLAYEPWPEAEEQYLKDDMIVLPI

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCATCCAAGATCAATCCTAGAAAAATTTGTTCTACTTCTTTCTCCCTTTGCACCACATATAGCTGAAGAGTTATGGCAACGTCTGGGACATGCTGATTCACTTGCATATGAGCCATGGCCAGAGGCCGAAGAGCAGTACCTGAAGGATGATATGATTGTGCTTCCTATT

Fln Alignment:

uagpf_mira_rep_c42660___PRSILEKFVLLLSPFAPHIAEELWQRLGHADSLAYEPWPEAEEQYLKDDMIVLPI
B9RXG5________________PRSVIEAYVLLLSPYAPHIAEELWFRLGHSNSLAYEPFPKANPAYLKDTRIVLPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain