SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43305

Length: 312 nt

UniGene Fasta

>uagpf_v2_unigene43305
CGTCGTGACCTTGGCTGTCACTCAATCCAAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGGTCATTAAGATGTTTAATCTCAAGATATGCGAATACCAACTTATGTCTAGGTGTATTAAGTGCAACGGAAGATTCATTGAAAAATCACTGACAACAAATGAAGCTGTAGCTGCTACAACATCAGAACAAGTAATTCCTGAGTTTCTATTAGATCGCAATTTAGAATTCTGGCAATGCTCAGATTGTCGGCAAATATATTGGGAGGGTACCCAATATCATAANGCGATTC

Ace file of the UniGene uagpf_v2_unigene43305

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67853	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] dbj\|BAB11227.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAP21257.1\| At5g24340 [Arabidopsis thaliana] dbj\|BAE99637.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED93295.1\| 3'	-	-	1.0e-26	60%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	0.0	64%
Blast2go	probable exonuclease mut-7 homolog	-	-	3.48117e-37	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	3'-5' exonuclease domain	IPR002562	-	0.0	-
Sma3	Protein of unknown function DUF82	IPR002782	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B4FMC3

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 103 - 265

Fln protein: S*PWLSLNPSNQAYRVKNLAKQEQLHEVIKMFNLKICEYQLMSRCIKCNGRFIEKSLTTNEAVAATTSEQVIPEFLLDRNLEFWQCSDCRQIYWEGTQYHKAI

Protein Length: 104

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCAAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGGTCATTAAGATGTTTAATCTCAAGATATGCGAATACCAACTTATGTCTAGGTGTATTAAGTGCAACGGAAGATTCATTGAAAAATCACTGACAACAAATGAAGCTGTAGCTGCTACAACATCAGAACAAGTAATTCCTGAGTTTCTATTAGATCGCAATTTAGAATTCTGGCAATGCTCAGATTGTCGGCAAATATATTGGGAGGGTACCCAATATCATAAaGCGATTC

Fln Alignment:

uagpf_mira_rep_c42611___NQAYRVKNLAKQEQLHEVIKMFNLKICEYQLMSRCIKCNGRFIEKSLTTNEAVAATTSEQVIPEFLLDRNLEFWQCSDCRQIYWEGTQYHKAI
B4FMC3________________NQVYRVKSLLKHDQLAEVINIFQLKISEDQLMSRCTKCNGSFIQKPLTLEEAVEASKGFQIIPTCLFNRNLEFWKCTDCNQLYWEGTQYHNAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain