SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43304

Length: 312 nt

UniGene Fasta

>uagpf_v2_unigene43304
CGTCGTGACCTTGGCTGTCACTCAAATGACCACAAGCACGAAACCATTAACCACCTAATCATAGAGAACTATCTCAGCCAAGCATCATTCAGACCAACATGAACATCCAATCAGTTGAAATTTTACATTAGACGCAGAGCAAGTGACAGTGCGGAGAAGAGAGGAGAGCAGAGCAGAGGTAATCATGATAGCAATTGGGTTCGAAGGCTCTGCAAACAAGATTGCGGTAGGATCGTGCAGCTGGATGGAACATTCTTTCAAATCCGCGGCACACATACATAACGCCTCCCGGCCATGGCTTCCTCCCTCGAG

Ace file of the UniGene uagpf_v2_unigene43304

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene856	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	glycoprotease M22 family protein [Arabidopsis thaliana] ref\|NP_974593.1\| glycoprotease M22 family protein [Arabidopsis thaliana] emb\|CAA16557.1\| glycoprotein endopeptidase - like protein [Arabidopsis thaliana] emb\|CAB79227.1\| glycoprotein endopeptidase-li	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	glycoprotease m22 family protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	89%
Blast2go	tRNA processing	GO:0008033	Biological Process	89%
Blast2go	metal ion binding	GO:0046872	Molecular Function	89%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	89%

Source	InterPros	Term	Type	Identity
Sma3		IPR009180	-	-
Sma3	Peptidase M22, glycoprotease	IPR000905	-	-
Sma3	Peptidase M22, glycoprotease, subgroup	IPR017861	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN15

Fln msg: Separated hits, possible frame ERROR between 232 and 252, Distance to subject end: 317 aas, your sequence is shorter than subject: 43 - 360

Fln protein: MIAIGFEGSANKIAVxxxxxxxxILSNPRHTYITPPGHGFLPR

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGACCACAAGCACGAAACCATTAACCACCTAATCATAGAGAACTATCTCAGCCAAGCATCATTCAGACCAACATGAACATCCAATCAGTTGAAATTTTACATTAGACGCAGAGCAAGTGACAGTGCGGAGAAGAGAGGAGAGCAGAGCAGAGGTAATC_-_ATGATAGCAATTGGGTTCGAAGGCTCTGCAAACAAGATTGCGGTAGGxxxxxxxxxxxxxxxxxxxxxCATTCTTTCAAATCCGCGGCACACATACATAACGCCTCCCGGCCATGGCTTCCTCCCTCGAG

Fln Alignment:

uagpf_mira_rep_c42610___MIAIGFEGSANKIAVGxxxxxxxILSNPRHTYITPPGHGFLPR
A9NN15________________MIAIGFEGSANKIAVGxxxxxxxILSNPRHTYITPPGHGFLPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain