SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43254

Length: 232 nt

UniGene Fasta

>uagpf_v2_unigene43254
CGTCGTGACCTTGGCTGTCACTCAAGCAGGGTAAGCGGGTTCACGCTTATGTGATTAAAGATGGATTGGAGTCTGATATTTTTGTTGTTAGTGGCCTTATTGACATGTATGCCAAATGTGGGATCATAGGTGAAGCAGACCAACTGTTTCAAAGAATGCCCGATCGAGATGAAGCAGTGTGGAATTCTATAATTGCAGGACATGCCCGAGAAGGACATGGTGAAGAGGCCCT

Ace file of the UniGene uagpf_v2_unigene43254

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene73058	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LFI1.1\|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53360, mitochondrial; Flags: Precursor emb\|CAB67643.1\| putative protein [Arabidopsis thaliana] gb\|AEE7	-	-	2.0e-14	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.97802e-19	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA modification	GO:0016556	Biological Process	1.97802e-19	68%

Source	InterPros	Term	Type	Identity
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 286 aas, your sequence is shorter than subject: 76 - 795

Fln protein: S*PWLSLKQGKRVHAYVIKDGLESDIFVVSGLIDMYAKCGIIGEADQLFQRMPDRDEAVWNSIIAGHAREGHGEEA

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAGGGTAAGCGGGTTCACGCTTATGTGATTAAAGATGGATTGGAGTCTGATATTTTTGTTGTTAGTGGCCTTATTGACATGTATGCCAAATGTGGGATCATAGGTGAAGCAGACCAACTGTTTCAAAGAATGCCCGATCGAGATGAAGCAGTGTGGAATTCTATAATTGCAGGACATGCCCGAGAAGGACATGGTGAAGAGGCCCT

Fln Alignment:

uagpf_mira_rep_c42526___WLSLKQGKRVHAYVIKDGLESDIFVVSGLIDMYAKCGIIGEADQLFQRMPDRDEAVWNSIIAGHAREGHGEEA
B8LQA8________________FLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain