SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43150

Length: 198 nt

UniGene Fasta

>uagpf_v2_unigene43150
CGTCGTGACCTTGGCTGTCACGGAGGCAGTACTGAATATGCTAAAAGGGCACCCACGAGTTGTCAAGTTTGAACAGGAAAGTCCGATGAATTTTGGCTGCACTATTGTGTACCTTAGATGAATTTTCTACGTGTTTTTTGCATATTCACTGACTTCACAGAACAAATGTTAGATACACAGAAAATTGCTCAGAACGTT

Ace file of the UniGene uagpf_v2_unigene43150

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13684	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	58%
Blast2go	muts2 isoform 2	-	-	2.41504e-09	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	2.41504e-09	74%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	2.41504e-09	74%
Blast2go	Thiamine metabolism	00730	2.41504e-09	74%
Blast2go	Metabolic pathways	01100	2.41504e-09	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of fidelity involved in DNA-dependent DNA replication	GO:0045005	Biological Process	2.41504e-09	74%
Blast2go	mismatch repair	GO:0006298	Biological Process	2.41504e-09	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	2.41504e-09	74%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	2.41504e-09	74%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	2.41504e-09	74%
Blast2go	mismatched DNA binding	GO:0030983	Molecular Function	2.41504e-09	74%
Blast2go	plastid	GO:0009536	Cellular Component	2.41504e-09	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9FDC0

Fln msg: your sequence is shorter than subject: 40 - 841

Fln protein: VVTLAVTEAVLNMLKGHPRVVKFEQESPMNFGCTIVYLR*

Protein Length: 41

Fln nts: CGTCGTGACCTTGGCTGTCACGGAGGCAGTACTGAATATGCTAAAAGGGCACCCACGAGTTGTCAAGTTTGAACAGGAAAGTCCGATGAATTTTGGCTGCACTATTGTGTACCTTAGATGA___ATTTTCTACGTGTTTTTTGCATATTCACTGACTTCACAGAACAAATGTTAGATACACAGAAAATTGCTCAGAACGTT

Fln Alignment:

uagpf_mira_rep_c42372___TLAVTEAVLNMLKGHPRVVKFEQESPMNFGCTIVYL
B9FDC0________________TGAVKECALGILRNHPRVAKFEDESPLNYGCTVAYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain