SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43142

Length: 215 nt

UniGene Fasta

>uagpf_v2_unigene43142
CGTCGTGACCTTGGCTGTCACTCCAAATGCGCATTATTACAAGCGAGGAACCTTTGAATTAAAAAAGATTGTGGAATATGCGAAAAATCAAGATTTCACCTTTATTATTGTTGTCCATACAAATCGCAGGGAGCCAAATGGAATGCTATTTATCAATTTGCCGGATGGTCCCACAGCCCATTTTAATCTCTCTAGTCTTGTTTTGCGCAAGGATA

Ace file of the UniGene uagpf_v2_unigene43142

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene798	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	MEE49; MEE49 (maternal effect embryo arrest 49)	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	ribosome production factor	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	82%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRF0

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 71 - 341

Fln protein: VVTLAVTPNAHYYKRGTFELKKIVEYAKNQDFTFIIVVHTNRREPNGMLFINLPDGPTAHFNLSSLVLRKD

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCCAAATGCGCATTATTACAAGCGAGGAACCTTTGAATTAAAAAAGATTGTGGAATATGCGAAAAATCAAGATTTCACCTTTATTATTGTTGTCCATACAAATCGCAGGGAGCCAAATGGAATGCTATTTATCAATTTGCCGGATGGTCCCACAGCCCATTTTAATCTCTCTAGTCTTGTTTTGCGCAAGGATA

Fln Alignment:

uagpf_mira_rep_c42361___LAVTPNAHYYKRGTFELKKIVEYAKNQDFTFIIVVHTNRREPNGMLFINLPDGPTAHFNLSSLVLRKD
C0PRF0________________LSVIPNAHYYKRGTYELKKIVEYAKSRDFTFIIVIHQNRREPNGMLFINLPDGPTAHFNLSSLVLRKD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain