SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43107

Length: 321 nt

UniGene Fasta

>uagpf_v2_unigene43107
CGTCGTGACCTTGGCTGTCACTCAGAAAATCCAAGATTCTCTGGCCTGCCATAGGAGCGGGAGCAGGAGGGATTGTTATTATAGTTGCAGTTGTTGTGGGTTTGTGCTTGTTCTGCCGCAAGAAGAAGTCAATGTCTGTGAAGCCTCATTCCCCAGGATGGCTTCCTTTATTCTTGCATGCTGGATCAGAGAGTACATACACTACCAAAGCTTCAAAGGGCAGCGTGAATAGTGTTAGTGTAAGCGCTCCTGCAAGAAGAGGCAGAAGATTCACCTTTACGGAAATCAAACTTGCAACTAACAGCTTTGATGAGTCGAGGG

Ace file of the UniGene uagpf_v2_unigene43107

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38492	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hercules receptor kinase 2 [Arabidopsis thaliana] sp\|Q9SA72.1\|Y1357_ARATH RecName: Full=Probable receptor-like protein kinase At1g30570; Flags: Precursor gb\|AAD25744.1\|AC007060_2 Contains eukaryotic protein kinase domain PF\|00069 [Arabidopsis thaliana] gb	-	-	8.99999e-40	59%
FL-Next	sp=Probable receptor-like protein kinase At1g30570; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Blast2go	feronia-like protein	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	73%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	73%
Blast2go	transferase activity	GO:0016740	Molecular Function	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SA72

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 325 aas, your sequence is shorter than subject: 106 - 849

Fln protein: S*PWLSLRKSKILWPAIGAGAGGIVIIVAVVVGLCLFCRKKKSMSVKPHSPGWLPLFLHAGSESTYTTKASKGSVNSVSVSAPARRGRRFTFTEIKLATNSFDESR

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAAAATCCAAGATTCTCTGGCCTGCCATAGGAGCGGGAGCAGGAGGGATTGTTATTATAGTTGCAGTTGTTGTGGGTTTGTGCTTGTTCTGCCGCAAGAAGAAGTCAATGTCTGTGAAGCCTCATTCCCCAGGATGGCTTCCTTTATTCTTGCATGCTGGATCAGAGAGTACATACACTACCAAAGCTTCAAAGGGCAGCGTGAATAGTGTTAGTGTAAGCGCTCCTGCAAGAAGAGGCAGAAGATTCACCTTTACGGAAATCAAACTTGCAACTAACAGCTTTGATGAGTCGAGGG

Fln Alignment:

uagpf_mira_rep_c42305___LCLFCRKKKSMS--VKPHSPGWLPLFLHAGSESTYTTKASKGSVNSVSVSAPARRGRRFTFTEIKLATNSFDE
Q9SA72________________VCL-CKKRRSKSDESKNNPPGWRPLFLHV-NNSTANAKATGGSLR-LNTLAASTMGRKFTLAEIRAATKNFDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain