SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43098

Length: 247 nt

UniGene Fasta

>uagpf_v2_unigene43098
CGTCGTGACCTTGGCTGTCACTCAAGGAATACGGCGGTGGCAGCTGGGTTGTAATTGGCATCCTGGCTGGAGGAATTTTCATTTTATGCTGTCAGAAGTGGCTGGAACGATATGGTGAAGTTAGCATGCTAGATATAAAAGGGGCAGATGCCAGAAAGATGGTCCTGGTGGTTGGAATAATGACTCTTCATTCATTTGGCGAAGGTTCAGGTGTTGGAGTCTCCTTTGCAGGCTCAAAGGACTGTCA

Ace file of the UniGene uagpf_v2_unigene43098

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2589	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	ZIP metal ion transporter-like protein [Arabidopsis thaliana] sp\|Q9C9Z1.2\|ZTP50_ARATH RecName: Full=Putative zinc transporter At3g08650 gb\|AEE74659.1\| ZIP metal ion transporter-like protein [Arabidopsis thaliana]	-	-	58%
FL-Next	Isoform 2 of Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650	-	-	71%
Blast2go	zinc transporter at3g08650-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	78%
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3		IPR000173	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3		IPR008512	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C9Z1-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 392 aas, your sequence is shorter than subject: 81 - 595

Fln protein: S*PWLSLKEYGGGSWVVIGILAGGIFILCCQKWLERYGEVSMLDIKGADARKMVLVVGIMTLHSFGEGSGVGVSFAGSKDC

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGAATACGGCGGTGGCAGCTGGGTTGTAATTGGCATCCTGGCTGGAGGAATTTTCATTTTATGCTGTCAGAAGTGGCTGGAACGATATGGTGAAGTTAGCATGCTAGATATAAAAGGGGCAGATGCCAGAAAGATGGTCCTGGTGGTTGGAATAATGACTCTTCATTCATTTGGCGAAGGTTCAGGTGTTGGAGTCTCCTTTGCAGGCTCAAAGGACTGTCA

Fln Alignment:

uagpf_mira_rep_c42286___KEYGGGSWVVIGILAGGIFILCCQKWLERYGEVSMLDIKGADARKMVLVVGIMTLH
Q9C9Z1-2______________QEHGSGNWVVTGILAGALFIWLCKQILEQYGEVSMLDIKGADATKVVLVIGIMTLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain