SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43094

Length: 245 nt

UniGene Fasta

>uagpf_v2_unigene43094
CGTCGTGACCTTGGCTGTCACTCATTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTCCTTTTGAGAAGAATTATTTTGCAGCTTAAGAGGGCTTTCAAACGCAATGACAAGCCTCTGTTACTAGCAGCAACAAAATTCATAGCTCACCTAGCGAACCAGCAAGTTGCACATGAGATCATTGCTTTGGAACTTCTTACTGTTTTGCTGGAGAATCCTACAGACGATAGTGTTGA

Ace file of the UniGene uagpf_v2_unigene43094

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3577	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Os12g0256300 protein n=6 Tax=Oryza sativa RepID=Q2QUQ9_ORYSJ	-	-	79%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	90%
Blast2go	pre-mrna-splicing factor cwc-22	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	RNA metabolic process	GO:0016070	Biological Process	91%
Blast2go	translation	GO:0006412	Biological Process	91%
Blast2go	RNA binding	GO:0003723	Molecular Function	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	MIF4G-like, type 3	IPR003890	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	MIF4-like, type 1/2/3	IPR016021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IGD9

Fln msg: Distance to subject end: 452 aas, your sequence is shorter than subject: 81 - 933

Fln protein: RRDLGCHSLVAVVNTKFPEVGNLLLRRIILQLKRAFKRNDKPLLLAATKFIAHLANQQVAHEIIALELLTVLLENPTDDSV

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGTTGCTGTGGTGAATACAAAGTTTCCAGAAGTTGGTAATCTCCTTTTGAGAAGAATTATTTTGCAGCTTAAGAGGGCTTTCAAACGCAATGACAAGCCTCTGTTACTAGCAGCAACAAAATTCATAGCTCACCTAGCGAACCAGCAAGTTGCACATGAGATCATTGCTTTGGAACTTCTTACTGTTTTGCTGGAGAATCCTACAGACGATAGTGTTGA

Fln Alignment:

uagpf_mira_rep_c42279___SLVAVVNTKFPEVGNXXXXXXXXXXKRAFKRNDKPLLLAATKFIAHLANQQVAHEIIALELLTVLLENPTDDSV
B9IGD9________________ALVAVVNTKFPEVGDLLLRRIVLQLKRAFKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLAVLLENPTDDSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain