SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43031

Length: 306 nt

UniGene Fasta

>uagpf_v2_unigene43031
CGTCGTGACCTTGGCTGTCACTCATTCGTTAGGTCATTACGCCTGTGCTTTACGGTGGTTTATTAGCCATGGATCAGTTATATGTGAAATATGTGGGAGTGTAGCAGAAAATATCAAGCTTTCAGACATGAACAGAGTTATGGCAGCTCTAAGTGAGTGTGAAACATTGAGGTCGAGGACAGCTGCTGGAGAGATGACTCCAGCATCTACCCAGTGGCATGCTGCTGTGGATCCAGATGCAGTAGCTGCAGTAAGGAGACAGCGACTTACTGAAATTGCATCATGGTTAATCCACGCATTCATGCG

Ace file of the UniGene uagpf_v2_unigene43031

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3233	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb\|AED91346.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	-	-	47%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	62%
Blast2go	ring fyve phd zinc finger-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of shoot apical meristem identity	GO:0010492	Biological Process	0.0	63%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H4N8

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 101 - 368

Fln protein: VVTLAVTHSLGHYACALRWFISHGSVICEICGSVAENIKLSDMNRVMAALSECETLRSRTAAGEMTPASTQWHAAVDPDAVAAVRRQRLTEIASWLIHAFM

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCGTTAGGTCATTACGCCTGTGCTTTACGGTGGTTTATTAGCCATGGATCAGTTATATGTGAAATATGTGGGAGTGTAGCAGAAAATATCAAGCTTTCAGACATGAACAGAGTTATGGCAGCTCTAAGTGAGTGTGAAACATTGAGGTCGAGGACAGCTGCTGGAGAGATGACTCCAGCATCTACCCAGTGGCATGCTGCTGTGGATCCAGATGCAGTAGCTGCAGTAAGGAGACAGCGACTTACTGAAATTGCATCATGGTTAATCCACGCATTCATGCG

Fln Alignment:

uagpf_mira_rep_c42183___SLGHYACALRWFISHGSVICEICGSVAENIKLSDMNRVMAALSECETLRSRTAAGEMTPASTQWHXXXXXXXXXXXRRQRLTEIASW
B9H4N8________________ALVHYACALKWFVNHGSTVCEICGHVAINIRTSDFKKVMVALKDYEALRERTATGDPNPAQVHASAGVDPDAVAAVRRQRLSEISLW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain