SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42988

Length: 369 nt

UniGene Fasta

>uagpf_v2_unigene42988
CGTCGTGACCTTGGCTGTCACTCATCCTGAACTTGTAGACCCTGTAAAAACAGCAGAAGCAGTTCCTCAGCTTAGTCGTGTCTTCAGCCAATTGACACAGGGAGGAGGGGCACGGAAAGTAAATGTTCAGCAGGTCACAGATGACTTGGCAAAGATTTCTGAAGATTATGTTTTTGTGCTCCCTCCTTACTTTGCACTCATTCTTAAGGCATTTTCGGTGCTTGAGGGTATTGGATTAGAGGCAGATCCAGATTATGCAATAGTAAATGGCTGTTATCCTTACTTGTCCAAGCGGCTTATAACAGATGACAGTTTGAGGACTCGTGCTGCTCTCAAGTCTTCTTATATGGAGAAAGTGACCGACTTGAT

Ace file of the UniGene uagpf_v2_unigene42988

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene42940	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted unusual protein kinase (ISS) [Ostreococcus tauri] emb\|CAL54263.1\| Predicted unusual protein kinase (ISS) [Ostreococcus tauri]	-	-	9.0e-34	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	ABC-1	IPR004147	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP98

Fln msg: Distance to subject end: 215 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 122 - 280

Fln protein: VVTLAVTHPELVDPVKTAEAVPQLSRVFSQLTQGGGARKVNVQQVTDDLAKISEDYVFVLPPYFALILKAFSVLEGIGLEADPDYAIVNGCYPYLSKRLITDDSLRTRAALKSSYMEKVTDL

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTGAACTTGTAGACCCTGTAAAAACAGCAGAAGCAGTTCCTCAGCTTAGTCGTGTCTTCAGCCAATTGACACAGGGAGGAGGGGCACGGAAAGTAAATGTTCAGCAGGTCACAGATGACTTGGCAAAGATTTCTGAAGATTATGTTTTTGTGCTCCCTCCTTACTTTGCACTCATTCTTAAGGCATTTTCGGTGCTTGAGGGTATTGGATTAGAGGCAGATCCAGATTATGCAATAGTAAATGGCTGTTATCCTTACTTGTCCAAGCGGCTTATAACAGATGACAGTTTGAGGACTCGTGCTGCTCTCAAGTCTTCTTATATGGAGAAAGTGACCGACTTGAT

Fln Alignment:

uagpf_mira_rep_c42113___VLPPYFALILKAFSVLEGIGLEADPDYAIVNGCYPYLSKRLITDDSLRTRAALK
A9NP98________________MIPPYFALILKAFSILEGIGLEADPDYAIINGCYPYLSKRLITDDSLRARAALK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain