SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42984

Length: 225 nt

UniGene Fasta

>uagpf_v2_unigene42984
CGTCGTGACCTTGGCTGTCACTCATATTGGTCAGGCTTTTTGCCTTGACAGAGGCAAGAGTAGTTCTGGCAATATGCTAAGTAAATTTTCTTGGAAGCTTAGTCCTCGTTATCAACATTGCCCAGATGTCACCCTAACTCTATATCCAAGTTTTGGCATGCCTATTGTTTTGAAAAGGTTGAGCCCTTCATGACAAAATGGTCATTTGGAAAAAATGAGGTAGGC

Ace file of the UniGene uagpf_v2_unigene42984

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62107	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RU82_PHYPA	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	cytochrome p450	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQC0

Fln msg: your sequence is shorter than subject: 64 - 227

Fln protein: VVTLAVTHIGQAFCLDRGKSSSGNMLSKFSWKLSPRYQHCPDVTLTLYPSFGMPIVLKRLSPS*

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTGGTCAGGCTTTTTGCCTTGACAGAGGCAAGAGTAGTTCTGGCAATATGCTAAGTAAATTTTCTTGGAAGCTTAGTCCTCGTTATCAACATTGCCCAGATGTCACCCTAACTCTATATCCAAGTTTTGGCATGCCTATTGTTTTGAAAAGGTTGAGCCCTTCATGA___CAAAATGGTCATTTGGAAAAAATGAGGTAGGC

Fln Alignment:

uagpf_mira_rep_c42107___IGQAFCLDRGKSSSGNMLSKFSWKLSPRYQHCPDVTLTLYPSFGMPIVLKRL
A9NQC0________________VGQNFAMLEAKTVLAMILQRLSFSLSPAYKHAPIAVLTLQPQYGMQIIFKSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain