SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42913

Length: 123 nt

UniGene Fasta

>uagpf_v2_unigene42913
CGTCGTGACCTTGGCTGTCACTCATTTTTCATATGGTATTGTGGTTGTAGGTGAGGCACCTTATGCTGAAATGTTTGGGGATAATCTCAATTTGACAATTCCCCTGGGTGGAGGTGACACGAT

Ace file of the UniGene uagpf_v2_unigene42913

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72861	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyl hydrolase-like protein (Fragment) n=13 Tax=Picea sitchensis RepID=E0ZH83_PICSI	-	-	4.0e-32	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	glycosyl hydrolase-like protein	-	-	4.25294e-42	92%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 40 - 631

Fln protein: VVTLAVTHFSYGIVVVGEAPYAEMFGDNLNLTIPLGGGDT

Protein Length: 41

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCATATGGTATTGTGGTTGTAGGTGAGGCACCTTATGCTGAAATGTTTGGGGATAATCTCAATTTGACAATTCCCCTGGGTGGAGGTGACACGAT

Fln Alignment:

uagpf_mira_rep_c42001___FSYGIVVVGEAPYAEMFGDNLNLTIPLGGGDT
A9NUD1________________FSYAIVVVGEAPYAEMNGDNLNLTIPLGGGDT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain