SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42911

Length: 371 nt

UniGene Fasta

>uagpf_v2_unigene42911
CGTCGTGACCTTGGCTGTCACTCAATGTATTGCAGCGGAAAACCATTCAGAGAAAAAGAGTTCTTCAAGAGACAAAATTAGAACCTGGTACTGGAACAGGTCGAGAGATAGTGTTTCAAGGTTTCAATTGGGAAAGCTGGAGAAGGAGATGGTACCTGGAGTTGGGCTCCTAAAGCTGCAGATTTATCTCAGAGTGGGATAACAGCGATATGGTTGCCACCACCAACAGAATCAGTTGCCCCTCAGGGTTACATGCCTCTTGACTATTATAATCTGAAGTCTGCTTATGGCACTCAAGAAGAACTCAAGTACTGCGTAGAGGAGATGCATAATCATGACATTCTGGCTCTGGGTAGATGTTGTTTTGAATC

Ace file of the UniGene uagpf_v2_unigene42911

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene831	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-amylase-like 3 [Arabidopsis thaliana] gb\|AAK91414.1\| At1g69830/T17F3_14 [Arabidopsis thaliana] gb\|AAN18209.1\| At1g69830/T17F3_14 [Arabidopsis thaliana] gb\|AEE34983.1\| alpha-amylase-like 3 [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	alpha-amylase isozyme 3d	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go		EC:3.2.1.6-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	starch catabolic process	GO:0005983	Biological Process	77%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	77%
Blast2go	glucan 1,4-alpha-maltotetraohydrolase activity	GO:0033910	Molecular Function	77%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	77%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr histidine phosphorylation site	IPR001020	-	-
Sma3	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: Distance to subject end: 315 aas, atg_distance in limit (1-15): atg_distance = 7, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 86 - 448

Fln protein: CFKVSIGKAGEGDGTWSWAPKAADLSQSGITAIWLPPPTESVAPQGYMPLDYYNLKSAYGTQEELKYCVEEMHNHDILALGRCCFE

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTATTGCAGCGGAAAACCATTCAGAGAAAAAGAGTTCTTCAAGAGACAAAATTAGAACCTGGTACTGGAACAGGTCGAGAGATAGTGTTTCAAGGTTTCAATTGGGAAAGCTGGAGAAGGAGATGGTACCTGGAGTTGGGCTCCTAAAGCTGCAGATTTATCTCAGAGTGGGATAACAGCGATATGGTTGCCACCACCAACAGAATCAGTTGCCCCTCAGGGTTACATGCCTCTTGACTATTATAATCTGAAGTCTGCTTATGGCACTCAAGAAGAACTCAAGTACTGCGTAGAGGAGATGCATAATCATGACATTCTGGCTCTGGGTAGATGTTGTTTTGAATC

Fln Alignment:

uagpf_mira_rep_c41999___KAGEGDGTWSWAPKAA--DLSQSGITAIWLPPPTESVAPQGYMPLDYYNLKSA-YGTQEELKYCVEEMHNHDILALG
A9NUX3________________ESAKGSSSWYNVLKGIVEDAADAGITDVWFPPPSQSLAPEGYLPQRLYDLNSSKYGSEQELRNAVDAFHQKGIGCVG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain