SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42798

Length: 347 nt

UniGene Fasta

>uagpf_v2_unigene42798
CGTCGTGACCTTGGCTGTCACTCATAAAAAATAGTTGCTTTGCAGGAAGGCCGTCTCAGCAAGATCGTCTGAGAGCTGATTTTTGGAGTGAAGCTTGCTTGCTTTCAAAACTCCATCATCCAAATATTGTGGCCTTCTATGGTGTGGTACCCGATGGACCTGGTGGAACCTTGGGAACTGTAACAGAATATATGGTGAATGGCTCTCTCAAACAGGTTTTGCATCGGAAGGATAGGACAATTGACCACCGCAAAAGGGTCATAATTGCAACAGATGCTGCTTTTGGAATGGAATATTTACATAACAAAAAAGTTGTGCACTTCGATCTGAAATGTGAGAATCTGCTA

Ace file of the UniGene uagpf_v2_unigene42798

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2523	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 142 aas, your sequence is shorter than subject: 115 - 319

Fln protein: S*PWLSLIKNSCFAGRPSQQDRLRADFWSEACLLSKLHHPNIVAFYGVVPDGPGGTLGTVTEYMVNGSLKQVLHRKDRTIDHRKRVIIATDAAFGMEYLHNKKVVHFDLKCENLL

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAAAAAATAGTTGCTTTGCAGGAAGGCCGTCTCAGCAAGATCGTCTGAGAGCTGATTTTTGGAGTGAAGCTTGCTTGCTTTCAAAACTCCATCATCCAAATATTGTGGCCTTCTATGGTGTGGTACCCGATGGACCTGGTGGAACCTTGGGAACTGTAACAGAATATATGGTGAATGGCTCTCTCAAACAGGTTTTGCATCGGAAGGATAGGACAATTGACCACCGCAAAAGGGTCATAATTGCAACAGATGCTGCTTTTGGAATGGAATATTTACATAACAAAAAAGTTGTGCACTTCGATCTGAAATGTGAGAATCTGCTA

Fln Alignment:

uagpf_mira_rep_c41845___QDRLRADFWSEACLLSKLHHPNIVAFYGVVPDGPGGTLGTVTEYMVNGSLKQVLHRKD--RTIDHRKRVIIATDAAFGMEYLH--NKKVVHFDLKCENLL
D5A8V0________________EERLK-EFLREVAIMKRLRHPNVVLFMGAVLSRP--NLSIVTEYLPRGSLYRLIHRPGTREILDERRRLRMALDVAKGMNHLHRLNPPIVHRDLKSPNLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain