SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42634

Length: 305 nt

UniGene Fasta

>uagpf_v2_unigene42634
CGTCGTGACCTTGGCTGTCACTCAATATATTCTAATCTCAAGACACTCAATCAATGCTTGTCTCAAATTGTTTCAAAGTGTAGGAGGCCGAGGAGGGCAGAAAGGTTGTGGCTACGATATATGGGAACTGTAGTTGGCCTTGCATTTTGTTCAGCATGGCTGTTACGGCATAGCAGGTTGATGGGCAGTACTGATCTTGATGACTGGATCAGCGAAGGCAGAGATTCTATCATTGCATTTTGGAAAGAACATGTTGAGCTACCGCTTCTGTCAATCAGGAATGAGCTGTTTGAGACATTCAGAAG

Ace file of the UniGene uagpf_v2_unigene42634

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1394	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	dgd1 suppressor 1 [Arabidopsis thaliana] gb\|AAO00810.1\| putative protein [Arabidopsis thaliana] gb\|AAP37724.1\| At5g12290 [Arabidopsis thaliana] gb\|AED91788.1\| dgd1 suppressor 1 [Arabidopsis thaliana]	-	-	43%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	54%
Blast2go	nuclear control of atpase protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	galactolipid biosynthetic process	GO:0019375	Biological Process	68%
Blast2go	hydrogen peroxide biosynthetic process	GO:0050665	Biological Process	68%
Blast2go	protein complex	GO:0043234	Cellular Component	68%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	68%
Blast2go	plastid	GO:0009536	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Nuclear control of ATP synthase 2	IPR013946	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HPT4

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 101 - 610

Fln protein: RRDLGCHSIYSNLKTLNQCLSQIVSKCRRPRRAERLWLRYMGTVVGLAFCSAWLLRHSRLMGSTDLDDWISEGRDSIIAFWKEHVELPLLSIRNELFETFR

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATTCTAATCTCAAGACACTCAATCAATGCTTGTCTCAAATTGTTTCAAAGTGTAGGAGGCCGAGGAGGGCAGAAAGGTTGTGGCTACGATATATGGGAACTGTAGTTGGCCTTGCATTTTGTTCAGCATGGCTGTTACGGCATAGCAGGTTGATGGGCAGTACTGATCTTGATGACTGGATCAGCGAAGGCAGAGATTCTATCATTGCATTTTGGAAAGAACATGTTGAGCTACCGCTTCTGTCAATCAGGAATGAGCTGTTTGAGACATTCAGAAG

Fln Alignment:

uagpf_mira_rep_c41600___HSIYSNLKTLNQCLSQIVSKCXXXXXXXXXXXXYMGTVVGLAFCSAWLLRHSRLMGSTDLDDWISEGRDSIIAFWKEHVELPLLSIRNELFETFR
B9HPT4________________NAVYKNLEKLDSYISVMVSKHQKPSKLSQHWIRHTCGVVGLSFCSSWLLRHSRLMGSPDIDNWVREAKDSTISFFNDHVEQPLLSIRDELFDTFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain