SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42567

Length: 218 nt

UniGene Fasta

>uagpf_v2_unigene42567
CGTCGTGACCTTGGCTGTCACTCAATTTTTCAGTCTCTTTTTGTGAAGAGATTAGATGATGTGGACCCCTGTGATGATCTGACTGATAAAGATATTCAAACATCTATTCAAAATGCTATTGGATTAAGAAGCGCACTCTTTGTACCTGAGGTACCCTTTCAAGTTCTGCTGAGGAGACAGATTGCTCGGCTTTTAGATCCAAGCCTCCAGTGTGTGCA

Ace file of the UniGene uagpf_v2_unigene42567

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67390	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to dynamin-like protein encoded by GenBank Accession Number X99669 [Arabidopsis thaliana]	-	-	4.0e-24	59%
FL-Next	Isoform 2 of Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A	-	-	0.0	76%
Blast2go	dynamin-related protein 3a	-	-	5.43821e-29	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome fission	GO:0016559	Biological Process	5.43821e-29	88%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	5.43821e-29	88%
Blast2go	post-embryonic development	GO:0009791	Biological Process	5.43821e-29	88%
Blast2go	mitochondrial fission	GO:0000266	Biological Process	5.43821e-29	88%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	5.43821e-29	88%
Blast2go	protein binding	GO:0005515	Molecular Function	5.43821e-29	88%
Blast2go	GTPase activity	GO:0003924	Molecular Function	5.43821e-29	88%
Blast2go	cytosol	GO:0005829	Cellular Component	5.43821e-29	88%
Blast2go	peroxisome	GO:0005777	Cellular Component	5.43821e-29	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.43821e-29	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	5.43821e-29	88%
Blast2go	membrane	GO:0016020	Cellular Component	5.43821e-29	88%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S944-2

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 72 - 480

Fln protein: RRDLGCHSIFQSLFVKRLDDVDPCDDLTDKDIQTSIQNAIGLRSALFVPEVPFQVLLRRQIARLLDPSLQCV

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCAGTCTCTTTTTGTGAAGAGATTAGATGATGTGGACCCCTGTGATGATCTGACTGATAAAGATATTCAAACATCTATTCAAAATGCTATTGGATTAAGAAGCGCACTCTTTGTACCTGAGGTACCCTTTCAAGTTCTGCTGAGGAGACAGATTGCTCGGCTTTTAGATCCAAGCCTCCAGTGTGTGCA

Fln Alignment:

uagpf_mira_rep_c41500___HSIFQSLFVKRLXXXXXXXXXXXXXIQTSIQNAIGLRSALFVPEVPFQVLLRRQIARLLDPSLQC
Q8S944-2______________HYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRLLDPSLQC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain