SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42551

Length: 231 nt

UniGene Fasta

>uagpf_v2_unigene42551
CGTCGTGACCTTGGCTGTCACTCAGTTTGTTGCAGTGCTAGCTGCTTGGTTCCGACTGAAATATCCCCATGTAGCCATTGGGGCTGTTGCATCATCTGCGCCCATCTTGCAGTTCGATAATATTGTGCCTGAAAATACCTTCTATGACATTGTTTCAAACGATTTCAAGCAAGCAAGCGAGAGTTGTTTCAGTGTTATCAGACAATCATGGGACGATCTACAAGAGAAATC

Ace file of the UniGene uagpf_v2_unigene42551

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1375	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	pfam05577, Peptidase_S28, Serine carboxypeptidase S28	-	-	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	serine carboxypeptidase s28 family protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	lysosome	GO:0005764	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S28	IPR008758	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: Distance to subject end: 250 aas, your sequence is shorter than subject: 76 - 509

Fln protein: VVTLAVTQFVAVLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQEK

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGTTGCAGTGCTAGCTGCTTGGTTCCGACTGAAATATCCCCATGTAGCCATTGGGGCTGTTGCATCATCTGCGCCCATCTTGCAGTTCGATAATATTGTGCCTGAAAATACCTTCTATGACATTGTTTCAAACGATTTCAAGCAAGCAAGCGAGAGTTGTTTCAGTGTTATCAGACAATCATGGGACGATCTACAAGAGAAATC

Fln Alignment:

uagpf_mira_rep_c41477___VTLAVTQFVAVLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQ
B8LPX2________________VVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALE

SSRs (tot: 1)

Start position	End position	Sequence	Length
166	178	CAAG CAAG CAAG C	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain