SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42544

Length: 212 nt

UniGene Fasta

>uagpf_v2_unigene42544
CGTCGTGACCTTGGCTGTCACTCAAGCATTTACTAAGAGCAACCCGGGAGGCTTTTCCAAGTTCAAATCAGCTGTCCCCTGAAACTAAGCATGTCCTTGACACAGTGATGGATCTCTATATCAGGGCTATGAATGAAGATGATGACAGGAAGTAGTTTCCCAAGCATGTATGTGCACAGCAGAGGTCATGACATCATTTGGTTACAGTGCAA

Ace file of the UniGene uagpf_v2_unigene42544

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5977	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gb\|AAL32805.1\| putative protein [Arabidopsis thaliana] gb\|AAR23706.1\| At4g27640 [Arabidopsis thaliana] gb\|AEE85373.1\| armadillo/beta-catenin-like repeat-containing protein [Arabi	-	-	54%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	57%
Blast2go	probable importin subunit beta-4-like	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	protein import into nucleus, docking	GO:0000059	Biological Process	77%
Blast2go	binding	GO:0005488	Molecular Function	77%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	77%
Blast2go	cytoplasm	GO:0005737	Cellular Component	77%
Blast2go	nuclear pore	GO:0005643	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SZV9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 291 aas, your sequence is shorter than subject: 51 - 1049

Fln protein: S*PWLSLKHLLRATREAFPSSNQLSPETKHVLDTVMDLYIRAMNEDDDRK*

Protein Length: 52

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCATTTACTAAGAGCAACCCGGGAGGCTTTTCCAAGTTCAAATCAGCTGTCCCCTGAAACTAAGCATGTCCTTGACACAGTGATGGATCTCTATATCAGGGCTATGAATGAAGATGATGACAGGAAGTAGTTTCCCAAGCATGTATGTGCACAGCAGAGGTCATGACATCATTTGGTTACAGTGCAA

Fln Alignment:

uagpf_mira_rep_c41468___LSLKHLLRATREAFPSSNQLSPETKHVLDTVMDLYIRAMNEDDDR
A9SZV9________________IAFQHLLTATKAAFPSDT-ISPEAKHVLDLIMEQYIKLMNEDDDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain