SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42487

Length: 364 nt

UniGene Fasta

>uagpf_v2_unigene42487
CGTCGTGACCTTGGCTGTCACTCAATTCGCCTACTGCTGCAATATATGTAACTTCAACATTCATCCCTGCTGTGCTGAGCTTCCAAGAGAACTCAGTTTCTATGGCCATCCCCAGCACGCCCTGAAGCTTTTCTCTGGGCCTCCCTTCGCTAAGAGTTCGTCCTACACATGCGGAGGGTGTCGCAGAAAGTGCTCGTCTTGGGTCTACTACTGTGCCAAATGCGGTTATTTCTCGACAAAGCCTGTGCCTAAATGGCCATCAACGGCGTCCAAACTCAGGGCATCGCTGTTCGCGCAAGCAGAGCAAGTTCAGAACGGCGCGCGCCTTGCCACGCAAGCCGGTCAATTCTTTGTGGGCCGTCTC

Ace file of the UniGene uagpf_v2_unigene42487

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62595	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DC1 domain-containing protein [Arabidopsis thaliana] gb\|AEE30051.1\| DC1 domain-containing protein [Arabidopsis thaliana]	-	-	42%
FL-Next	tr=Protein binding protein, putative; Ricinus communis (Castor bean).	-	-	43%
Blast2go	dc1 domain-containing protein	-	-	54%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DC1	IPR004146	-	-
Sma3	C1-like	IPR011424	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9REL2

Fln msg: STOP codon was not found. Distance to subject end: 34 aas, your sequence is shorter than subject: 121 - 187

Fln protein: VVTLAVTQFAYCCNICNFNIHPCCAELPRELSFYGHPQHALKLFSGPPFAKSSSYTCGGCRRKCSSWVYYCAKCGYFSTKPVPKWPSTASKLRASLFAQAEQVQNGARLATQAGQFFVGRL

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGCCTACTGCTGCAATATATGTAACTTCAACATTCATCCCTGCTGTGCTGAGCTTCCAAGAGAACTCAGTTTCTATGGCCATCCCCAGCACGCCCTGAAGCTTTTCTCTGGGCCTCCCTTCGCTAAGAGTTCGTCCTACACATGCGGAGGGTGTCGCAGAAAGTGCTCGTCTTGGGTCTACTACTGTGCCAAATGCGGTTATTTCTCGACAAAGCCTGTGCCTAAATGGCCATCAACGGCGTCCAAACTCAGGGCATCGCTGTTCGCGCAAGCAGAGCAAGTTCAGAACGGCGCGCGCCTTGCCACGCAAGCCGGTCAATTCTTTGTGGGCCGTCTC

Fln Alignment:

uagpf_mira_rep_c41379___TQFAYCCNICNFNIHPCCAELPRELSFYGHPQHALKLFSGPPFAK-SSSYTCGGCRRKCSS--WVYYCAKCGY
B9REL2________________TAFAYHCAVCRFNLHVGCAFLPKNIKHVDH-SHPLTLFYSSLMERGSTSFTCDACRKKVSQGYWIYYCPECDY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain