SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42442

Length: 276 nt

UniGene Fasta

>uagpf_v2_unigene42442
CGTCGTGACCTTGGCTGTCACTCAAGAAGAAAGCTAAAGCAAGAGGAAAATACATGTGGGCAGTTGTTGATGGAGTGAAAGAGAAGGTTGGCAATTTCAGAGTTGAGCCCCCAGGATTATTTCGTGGCCGTGGAGAGCATCCTAAGATGGGTAAATTGAAGAAGAGAATTTATCCAGAGGACATTACAATTAATATTGGGTCTAAGGCTCCGATCCCGGAGTGTACAATACCTGGCCACAGGTGGAAAGAGGTCAGACATGATAACTCAGTCACAT

Ace file of the UniGene uagpf_v2_unigene42442

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27110	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI	-	-	77%
FL-Next	sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	dna topoisomerase i	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	86%
Blast2go	isomerase activity	GO:0016853	Molecular Function	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	DNA topoisomerase I, C-terminal	IPR001631	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	DNA topoisomerase I, DNA binding, eukaryotic-type	IPR008336	-	-
Sma3	DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type	IPR013030	-	-
Sma3	DNA topoisomerase I, C-terminal, eukaryotic-type	IPR013499	-	-
Sma3	DNA topoisomerase I, catalytic core, eukaryotic-type	IPR013500	-	-
Sma3	DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type	IPR014711	-	-
Sma3	DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type	IPR014727	-	-
Sma3		IPR015706	-	-
Sma3		IPR018115	-	-
Sma3	DNA topoisomerase I, active site	IPR018521	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P30181

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 354 aas, your sequence is shorter than subject: 91 - 916

Fln protein: S*PWLSLKKKAKARGKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIYPEDITINIGSKAPIPECTIPGHRWKEVRHDNSVT

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAAGAAAGCTAAAGCAAGAGGAAAATACATGTGGGCAGTTGTTGATGGAGTGAAAGAGAAGGTTGGCAATTTCAGAGTTGAGCCCCCAGGATTATTTCGTGGCCGTGGAGAGCATCCTAAGATGGGTAAATTGAAGAAGAGAATTTATCCAGAGGACATTACAATTAATATTGGGTCTAAGGCTCCGATCCCGGAGTGTACAATACCTGGCCACAGGTGGAAAGAGGTCAGACATGATAACTCAGTCACAT

Fln Alignment:

uagpf_mira_rep_c41308___KKKAKARGKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIYPEDITINIGSKAPIPECTIPGHRWKEVRHDNSVT
P30181________________EEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMGKLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain