SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42434

Length: 275 nt

UniGene Fasta

>uagpf_v2_unigene42434
CGTCGTGACCTTGGCTGTCACTCATTTTTCCTCGCCGTCCTGGGAAAGGTCAAACAGGCATCAAGTGCCTTGTGAAGGCAAATCACTTTATTACAGAGTTACCGGAAAAGGATCTTCACCAATACGATGTGACTATAAAACCTGAGGTGACTTCACGAGGTCTCAACAGATCTGTTATCAGACAACTAGTCAACCAATACAGAGATACCCATTTGGGTAAAAGGCTTCCTGTTTATGATGGTCGAAGAAGTCTGTACACAGCTGGGCCATTGCCC

Ace file of the UniGene uagpf_v2_unigene42434

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene56473	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO	-	-	2.0e-38	76%
FL-Next	sp=Protein argonaute 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Blast2go	protein argonaute	-	-	3.22299e-44	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin metabolic process	GO:0009850	Biological Process	3.22299e-44	85%
Blast2go	adventitious root development	GO:0048830	Biological Process	3.22299e-44	85%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	3.22299e-44	85%
Blast2go	stem cell development	GO:0048864	Biological Process	3.22299e-44	85%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	3.22299e-44	85%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	3.22299e-44	85%
Blast2go	response to far red light	GO:0010218	Biological Process	3.22299e-44	85%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	3.22299e-44	85%
Blast2go	gene silencing by miRNA	GO:0035195	Biological Process	3.22299e-44	85%
Blast2go	RNA interference	GO:0016246	Biological Process	3.22299e-44	85%
Blast2go	miRNA binding	GO:0035198	Molecular Function	3.22299e-44	85%
Blast2go	endoribonuclease activity	GO:0004521	Molecular Function	3.22299e-44	85%
Blast2go	protein binding	GO:0005515	Molecular Function	3.22299e-44	85%
Blast2go	siRNA binding	GO:0035197	Molecular Function	3.22299e-44	85%
Blast2go	cytosol	GO:0005829	Cellular Component	3.22299e-44	85%
Blast2go	nucleus	GO:0005634	Cellular Component	3.22299e-44	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04379

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 787 aas, your sequence is shorter than subject: 91 - 1048

Fln protein: S*PWLSLIFPRRPGKGQTGIKCLVKANHFITELPEKDLHQYDVTIKPEVTSRGLNRSVIRQLVNQYRDTHLGKRLPVYDGRRSLYTAGPLP

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCCTCGCCGTCCTGGGAAAGGTCAAACAGGCATCAAGTGCCTTGTGAAGGCAAATCACTTTATTACAGAGTTACCGGAAAAGGATCTTCACCAATACGATGTGACTATAAAACCTGAGGTGACTTCACGAGGTCTCAACAGATCTGTTATCAGACAACTAGTCAACCAATACAGAGATACCCATTTGGGTAAAAGGCTTCCTGTTTATGATGGTCGAAGAAGTCTGTACACAGCTGGGCCATTGCCC

Fln Alignment:

uagpf_mira_rep_c41300___FPRRPGKGQTGIKCLVKANHFITELPEKDLHQYDVTIKPEVTSRGLNRSVIRQLVNQYRDTHLGKRLPVYDGRRSLYTAGPLP
O04379________________FPMRPGKGQSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLPAYDGRKSLYTAGPLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain