SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42360

Length: 201 nt

UniGene Fasta

>uagpf_v2_unigene42360
CGTCGTGACCTTGGCTGTCACTCAAAGATGTCGGAATGAGGAGCTTGCATTGCATATGAAGATGATTGCAATTTTTCTGATTCTGTTAACTAGTGCTTGTGGAGTAGCATTGCCCCTCTTGGGAAGGAGGTTCAAATTCCTAAGAACAGATGGAAGCGTTTTTGTATTGCCAAGGCCTTTGCAGCTGGAGTTATTCTGGCA

Ace file of the UniGene uagpf_v2_unigene42360

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene73879	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ZIP family metal transporter n=1 Tax=Chengiopanax sciadophylloides RepID=Q2Z1Q1_CHESC	-	-	1.0e-06	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	zinc iron	-	-	9.30755e-13	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	copper ion transmembrane transport	GO:0035434	Biological Process	9.30755e-13	71%
Blast2go	zinc ion transmembrane transport	GO:0071577	Biological Process	9.30755e-13	71%
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	9.30755e-13	71%
Blast2go	iron ion transmembrane transport	GO:0034755	Biological Process	9.30755e-13	71%
Blast2go	gravitropism	GO:0009630	Biological Process	9.30755e-13	71%
Blast2go	zinc ion transmembrane transporter activity	GO:0005385	Molecular Function	9.30755e-13	71%
Blast2go	protein binding	GO:0005515	Molecular Function	9.30755e-13	71%
Blast2go	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	9.30755e-13	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE89

Fln msg: Distance to subject end: 298 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 48 - 369

Fln protein: MKMIAIFLILLTSACGVALPLLGRRFKFLRTDGSVFVLPRPLQLELFW

Protein Length: 49

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGATGTCGGAATGAGGAGCTTGCATTGCAT_-_ATGAAGATGATTGCAATTTTTCTGATTCTGTTAACTAGTGCTTGTGGAGTAGCATTGCCCCTCTTGGGAAGGAGGTTCAAATTCCTAAGAACAGATGGAAGCGTTTTTGTATTGCCAAGGCCTTTGCAGCTGGAGTTATTCTGGCA

Fln Alignment:

uagpf_mira_rep_c41191___CRNEELALHMKMIAIFLILLTSACGVALPLLGRRFKFLRTDGSVFVLPR
D5AE89________________CRNEELALHMKTVAIFIILIASAFGVAFPLLARRLKCVKMDGTIFVFSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain