SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42338

Length: 449 nt

UniGene Fasta

>uagpf_v2_unigene42338
CGTCGTGACCTTGGCTGTCACTCAGGCTTCGTCGAAGTGAAGCGCAAATCCGTGGCGGCCCACTACGGTTTTCTGGACCGCCCCAAGTCCATGATCCCCATAAGCGTTTTCTGGCTCGTTCCACAGTACGCCCTTCACGGCATAGCAGAAGCTTTCATGTCGATCGGGCACTTGGAATTCTTCTATGACCAGAGTCCCGAAAGCATGCGGAGCACCGCCACGGCTCTTTTCTGGACTTCAATCTCCGCCGGTAGCTATTTCAGCACTCTTCTTGTTTCCACCATCCACAAGGTCACATCCAGAGACGGGCACCAGAATTGGCTCCCCACCAACCTCAACAGAGGAAGGCTGGAGTATTTTTACTGGCTCATCACTCTGCTGCAAGTCTTCAATCTGCTCTATTACATGGTCTGCGCTCGCTTCTACACCTACAAGCCTTTCGTTGTGGC

Ace file of the UniGene uagpf_v2_unigene42338

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1171	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative nitrite transporter [Arabidopsis thaliana] sp\|Q9SX20.1\|PTR18_ARATH RecName: Full=Probable nitrite transporter At1g68570 gb\|AAD49986.1\|AC008075_19 Similar to gb\|AF023472 peptide transporter from Hordeum vulgare and is a member of the PF\|00854 Pept	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	nitrite transporter	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	78%
Blast2go	glycolipid transport	GO:0046836	Biological Process	78%
Blast2go	glycolipid transporter activity	GO:0017089	Molecular Function	78%
Blast2go	glycolipid binding	GO:0051861	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQS8

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 149 - 649

Fln protein: RRDLGCHSGFVEVKRKSVAAHYGFLDRPKSMIPISVFWLVPQYALHGIAEAFMSIGHLEFFYDQSPESMRSTATALFWTSISAGSYFSTLLVSTIHKVTSRDGHQNWLPTNLNRGRLEYFYWLITLLQVFNLLYYMVCARFYTYKPFVV

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTCGTCGAAGTGAAGCGCAAATCCGTGGCGGCCCACTACGGTTTTCTGGACCGCCCCAAGTCCATGATCCCCATAAGCGTTTTCTGGCTCGTTCCACAGTACGCCCTTCACGGCATAGCAGAAGCTTTCATGTCGATCGGGCACTTGGAATTCTTCTATGACCAGAGTCCCGAAAGCATGCGGAGCACCGCCACGGCTCTTTTCTGGACTTCAATCTCCGCCGGTAGCTATTTCAGCACTCTTCTTGTTTCCACCATCCACAAGGTCACATCCAGAGACGGGCACCAGAATTGGCTCCCCACCAACCTCAACAGAGGAAGGCTGGAGTATTTTTACTGGCTCATCACTCTGCTGCAAGTCTTCAATCTGCTCTATTACATGGTCTGCGCTCGCTTCTACACCTACAAGCCTTTCGTTGTGGC

Fln Alignment:

uagpf_mira_rep_c41163___SGFVEVKRKSVAAHYGFLDRPKSMIPISVFWLVPQYALHGIAEAFMSIGHLEFFYDQSPESMRSTATALFWTSISAGSYFSTLLVSTIHKVTSRDGHQNWLPTNLNRGRLEYFYWLITLLQVFNLLYYMVCARFYTYKPFVV
C0PQS8________________SGFVEVKRKSMAAQYGLLDRPKSTIPISVFWLIPQYSLHGIAEAFMSIGHLEFFYDQSPESMRSTATALFWTSISAGSYLSTLLVSTVHKVTSKDGHHNWLPSNLNRGRLEYFYWLITLLQLFNLLYYLVCARFYTYKPFVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain