SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42262

Length: 408 nt

UniGene Fasta

>uagpf_v2_unigene42262
CGTCGTGACCTTGGCTGTCACTCAAGATTTGAACAGTTCTGTATCTGCCAAGAAGTTGCGTCTGTCTGTTGTCAACCAATCTACTCAGAGGCCTGAATTTAACAAATCTGCTCATTCCCTGGGTCTCTGTACGATCTCTGAGTTGCCTGTTGCAGCTCCTGATGAAACCAGAGACACTTTGTCAGACAAGAAATGGGAGGAGGAGAATCGGCAGTGGACAGATAGGGAAAACGAATGGATCTCTTTGGTTGATGAATTGAGAGCAGAGCTTGATTCTGTCAATTGCTTGGCAGAGAAAAGAAAGCAAGAAGTGGAAAATGAGCAAAGATGTTCTGAAGAGCTGAAAGAAGCACTCCAGATGGCTATGGAGGTCATGCACGCATTCTAGATCAATATGCAGAGCTTCAA

Ace file of the UniGene uagpf_v2_unigene42262

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27334	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] gb\|AAF78893.1\| phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] gb\|AAF78894.1\| phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] gb\|AEE	-	-	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	50%
Blast2go	phragmoplast-associated kinesin-related protein 1	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Plus-end-directed kinesin ATPase.	EC:3.6.4.4	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	microgametogenesis	GO:0055046	Biological Process	62%
Blast2go	phragmoplast assembly	GO:0000914	Biological Process	62%
Blast2go	plus-end-directed microtubule motor activity	GO:0008574	Molecular Function	62%
Blast2go	phragmoplast	GO:0009524	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	ARP23 complex 20kDa subunit	IPR008384	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GND6

Fln msg: Overlapping hits, possible frame ERROR between 370 and 370, Distance to subject end: 202 aas, your sequence is shorter than subject: 136 - 1294

Fln protein: VVTLAVTQDLNSSVSAKKLRLSVVNQSTQRPEFNKSAHSLGLCTISELPVAAPDETRDTLSDKKWEEENRQWTDRENEWISLVDELRAELDSVNCLAEKRKQEVENEQRCSEELKEALQMAMxxHARILDQYAELQ

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTGAACAGTTCTGTATCTGCCAAGAAGTTGCGTCTGTCTGTTGTCAACCAATCTACTCAGAGGCCTGAATTTAACAAATCTGCTCATTCCCTGGGTCTCTGTACGATCTCTGAGTTGCCTGTTGCAGCTCCTGATGAAACCAGAGACACTTTGTCAGACAAGAAATGGGAGGAGGAGAATCGGCAGTGGACAGATAGGGAAAACGAATGGATCTCTTTGGTTGATGAATTGAGAGCAGAGCTTGATTCTGTCAATTGCTTGGCAGAGAAAAGAAAGCAAGAAGTGGAAAATGAGCAAAGATGTTCTGAAGAGCTGAAAGAAGCACTCCAGATGGCTATGxxxxxxCATGCACGCATTCTAGATCAATATGCAGAGCTTCAA

Fln Alignment:

uagpf_mira_rep_c41047___HSLGLCTISELPVAAP-----DETRDTLSDKKWEEENRQWTDRENEWISLVDELRAELDSVNCLAEKRKQEVENEQRCSEELKEALQMAMEGHARILDQYAELQ
B9GND6________________NSLLKLTYSCEPSLAPLLNTIQESSEESPEEKLEMERTRWMDAESKWISLAEELRAELDASRALAEKLKQELGTEKRCAEELKEAMQMAMEGHARMLEQYADLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain