SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene42156

Length: 273 nt

UniGene Fasta

>uagpf_v2_unigene42156
CGTCGTGACCTTGGCTGTCACTCAAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCT

Ace file of the UniGene uagpf_v2_unigene42156

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3813	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	COP9 signalosome complex subunit 1 [Arabidopsis thaliana] sp\|P45432.2\|CSN1_ARATH RecName: Full=COP9 signalosome complex subunit 1; Short=CSN complex subunit 1; AltName: Full=Constitutive photomorphogenesis protein 11; AltName: Full=Protein FUSCA 6 gb\|AAK2	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	fusca protein fus6	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	response to absence of light	GO:0009646	Biological Process	87%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	87%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	cullin deneddylation	GO:0010388	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	signalosome	GO:0008180	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC30

Fln msg: Distance to subject end: 230 aas, your sequence is shorter than subject: 91 - 433

Fln protein: RRDLGCHSKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQDQP

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCT

Fln Alignment:

uagpf_mira_rep_c40891___KTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQDQ
D5AC30________________KTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain