SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41954

Length: 324 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene41954
GATTCACCAGATGAATGTGAAGACAATGTTCCTCAATGAAGTTATTGAGGAAGAGGTATATGTAGAGCAGCCATAGGGGTTTGAGGTACATGACAAAGAGTCACATGTATAAAGGCTTAAGAAAGCCTTGTATCGACTCAAACAAGCGTTGAAGGCATGGTACTACAAGATAGACAACTATTTGCAAAGCATAGACTTCACTAATGAGGCAGATTCCAACCTTAACTTCATATTGGTTGGATCTAAGCCCCCTATCTTGGTGCTCTATGTGGATAGTTTGATTCTTATTGGGCCAGAGAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene41954 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene73667	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	1.0e-24	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	reverse transcriptase	-	-	1.35217e-32	72%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 165 aas, your sequence is shorter than subject: 102 - 363

Fln protein: IHQMNVKTMFLNEVIEEEVYVEQP*GFEVHDKESHV*RLKKALYRLKQALKAWYYKIDNYLQSIDFTNEADSNLNFILVGSKPPILVLYVDSLILIGPENE*

Protein Length: 103

Fln nts: GATTCACCAGATGAATGTGAAGACAATGTTCCTCAATGAAGTTATTGAGGAAGAGGTATATGTAGAGCAGCCATAGGGGTTTGAGGTACATGACAAAGAGTCACATGTATAAAGGCTTAAGAAAGCCTTGTATCGACTCAAACAAGCGTTGAAGGCATGGTACTACAAGATAGACAACTATTTGCAAAGCATAGACTTCACTAATGAGGCAGATTCCAACCTTAACTTCATATTGGTTGGATCTAAGCCCCCTATCTTGGTGCTCTATGTGGATAGTTTGATTCTTATTGGGCCAGAGAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c40615___IHQMNVKTMFLNEVIEEEVYVEQP*GFEVHDKESHV*RLKKALYRLKQALKAWYYKIDNYLQSIDFTNEADSNLNFILVGSKPPILV--LYVDSLILIG
B8LKV8________________VYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain