SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41868

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene41868
GCGATACAAACGGAGAGTTCTACATTTATTCCAGCATTACCAGGTGAAACTCTCACTTACCTATGGAAAATCCCAGAAAGATCTGGAGCTGGAACAGAGGATTCTGCTTGTATTCCATGGGCTTACTATTCAACTGTGGATCAAGTTAAGGATCTCTACAGTGGATTAATTGGCCCCCTGATTGTTTGTCGAAGACATTACTTGAAAGTATTCAATCCCAGAAAGAAACTGGAATTTACCCTTCTGTTTCAGTTTTTGATGAGAATGAATCTTGGTATTTAGATGACAACATCAAAACAAACTCTGATCACCCCAAGAAAGTAAACAAAGATGATGAGGAATTCATAGAAAGCAATAAAATGCATGCTGTTAATGGAAGAATGTTTGGAAACCCACAAGGCCTCACAATGCTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene41868 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene73657	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ceruloplasmin n=11 Tax=Simiiformes RepID=CERU_HUMAN	-	-	90%
FL-Next	tr=Ferroxidase-like protein; Dunaliella salina (Green alga).	-	-	40%
Blast2go	cp protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	92%
Blast2go	lung development	GO:0030324	Biological Process	92%
Blast2go	liver development	GO:0001889	Biological Process	92%
Blast2go	response to nutrient	GO:0007584	Biological Process	92%
Blast2go	ion transport	GO:0006811	Biological Process	92%
Blast2go	response to copper ion	GO:0046688	Biological Process	92%
Blast2go	aging	GO:0007568	Biological Process	92%
Blast2go	copper ion binding	GO:0005507	Molecular Function	92%
Blast2go	chaperone binding	GO:0051087	Molecular Function	92%
Blast2go	extracellular space	GO:0005615	Cellular Component	92%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q52PK1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 437 aas, your sequence is shorter than subject: 94 - 1075

Fln protein: AIQTESSTFIPALPGETLTYLWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRHYLKVFNPRKKLEFTLLFQFLMRMNLGI*

Protein Length: 95

Fln nts: GCGATACAAACGGAGAGTTCTACATTTATTCCAGCATTACCAGGTGAAACTCTCACTTACCTATGGAAAATCCCAGAAAGATCTGGAGCTGGAACAGAGGATTCTGCTTGTATTCCATGGGCTTACTATTCAACTGTGGATCAAGTTAAGGATCTCTACAGTGGATTAATTGGCCCCCTGATTGTTTGTCGAAGACATTACTTGAAAGTATTCAATCCCAGAAAGAAACTGGAATTTACCCTTCTGTTTCAGTTTTTGATGAGAATGAATCTTGGTATTTAGATGACAACATCAAAACAAACTCTGATCACCCCAAGAAAGTAAACAAAGATGATGAGGAATTCATAGAAAGCAATAAAATGCATGCTGTTAATGGAAGAATGTTTGGAAACCCACAAGGCCTCACAATGCTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c40492___PGETLTYLWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRHYLKV
Q52PK1________________PGDTFTYMWHVTEAAGPGPKDPSSKLWMYHSHTDEVRDTYAGLFGGILVYDKDRSKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain