SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41792

Length: 151 nt

UniGene Fasta

>uagpf_v2_unigene41792
CGTCGTGACCTTGGCTGTCACTCAATCTCAGCACAGGAATTGTTGGAACTCGAGGGTACATGGCTCCAGAATATCTTATTCATGGCCATATGACAGAAAAGATCGATGTCTATAGTTTTGGGGTGCTGGTTCTGGAGATCATAAGTGGCAG

Ace file of the UniGene uagpf_v2_unigene41792

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36477	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine-rich receptor-like protein kinase 2 [Arabidopsis thaliana] sp\|Q9CAL3.1\|CRK2_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 2; Short=Cysteine-rich RLK2; Flags: Precursor gb\|AAG52471.1\|AC010796_10 putative protein kinase; 37247-3480	-	-	4.0e-28	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	cysteine-rich receptor-like protein kinase 2	-	-	3.28756e-37	68%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 123 aas, your sequence is shorter than subject: 49 - 245

Fln protein: S*PWLSLNLSTGIVGTRGYMAPEYLIHGHMTEKIDVYSFGVLVLEIISG

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCAGCACAGGAATTGTTGGAACTCGAGGGTACATGGCTCCAGAATATCTTATTCATGGCCATATGACAGAAAAGATCGATGTCTATAGTTTTGGGGTGCTGGTTCTGGAGATCATAAGTGGCAG

Fln Alignment:

uagpf_mira_rep_c40384___NLSTGIVGTRGYMAPEYLIHGHMTEKIDVYSFGVLVLEIISG
B8LLL8________________HVSTRVGGTIGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain