SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41459

Length: 210 nt

UniGene Fasta

>uagpf_v2_unigene41459
CGTCGTGACCTTGGCTGTCACTCAAAGTTGAAGGAGGAAGTGAATTTTCTTAAGGAACTTGTGAAAAAATCTGCAGAGGATGAAGCTCAAATGAATGGATTGGCTTTAGAGGAGCCAGGCATGGACAAAATGCAACCCACTATGAAAGAGCTTATGTTGAAAGAAAAACAGTTGGAACGGTTGACCAGAGATTTGGATGATAAGATTCGT

Ace file of the UniGene uagpf_v2_unigene41459

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7003	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic initiation factor 4B n=4 Tax=Arabidopsis RepID=Q9LIN5_ARATH	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	eukaryotic initiation factor 4b	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	0.0	55%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant specific eukaryotic initiation factor 4B	IPR010433	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKF3

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 70 - 567

Fln protein: RRDLGCHSKLKEEVNFLKELVKKSAEDEAQMNGLALEEPGMDKMQPTMKELMLKEKQLERLTRDLDDKIR

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTGAAGGAGGAAGTGAATTTTCTTAAGGAACTTGTGAAAAAATCTGCAGAGGATGAAGCTCAAATGAATGGATTGGCTTTAGAGGAGCCAGGCATGGACAAAATGCAACCCACTATGAAAGAGCTTATGTTGAAAGAAAAACAGTTGGAACGGTTGACCAGAGATTTGGATGATAAGATTCGT

Fln Alignment:

uagpf_mira_rep_c39863___KLKEEVNFLKELVKKSAEDEAQMNGLALEEPGMDKMQPTMKELMLKEKQLERLTRDLDDKIR
B8LKF3________________KLKEEVNFLKELVKKSAENEAQVDGLALGEQDMEQMQSTMKELVLKEKQLEQLTRDLDDKVR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
36		33	66		0.997458
38	66			33	0.997459
39	66	33			0.997459
45	66	33			0.997457
48			33	66	0.997476
49			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain