SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41433

Length: 216 nt

UniGene Fasta

>uagpf_v2_unigene41433
CGTCGTGACCTTGGCTGTCACTCATTCTTGGTACCTCTATGGTTATTGGAGATGGTGTCCTCACTCCTTGCATCTCAGTTATATCAGCTGTTCAAGGAATAAAGACTGTCCACAATTCACTCAGCCAGGAGGTGGTGGCTATGATATCTGTGGCGATTTTAGTAATACTCTTTTCTGTCCAGAGATTCGGAACCCAAAAAGTTGGTTACTCATTCG

Ace file of the UniGene uagpf_v2_unigene41433

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4775	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	high-affinity K+ transporter [Capsicum annuum]	-	-	58%
FL-Next	sp=Potassium transporter 5; Oryza sativa subsp. japonica (Rice).	-	-	69%
Blast2go	potassium transporter 5	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	80%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5JK32

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 523 aas, your sequence is shorter than subject: 71 - 781

Fln protein: S*PWLSLILGTSMVIGDGVLTPCISVISAVQGIKTVHNSLSQEVVAMISVAILVILFSVQRFGTQKVGYSF

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTGGTACCTCTATGGTTATTGGAGATGGTGTCCTCACTCCTTGCATCTCAGTTATATCAGCTGTTCAAGGAATAAAGACTGTCCACAATTCACTCAGCCAGGAGGTGGTGGCTATGATATCTGTGGCGATTTTAGTAATACTCTTTTCTGTCCAGAGATTCGGAACCCAAAAAGTTGGTTACTCATTCG

Fln Alignment:

uagpf_mira_c39817___WLSLILGTSMVIGDGVLTPCISVISAVQGIKTVHNSLSQEVVAMISVAILVILFSVQRFGTQKVGYSF
Q5JK32________________FLVTILATSMVIGDGVLTPCISVLSAVGGIKESAKSLTQGQIAGIAIAILIVLFLVQRFGTDKVGYSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain