SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41282

Length: 262 nt

UniGene Fasta

>uagpf_v2_unigene41282
CGTCGTGACCTTGGCTGTCACTCAAAGGCTTTGGATAGTGTTAGCGACATACGAGATGAAAGTGACCGTACAGGGATGCGAATAGTACTGGAGTTGAAAAAAGGTTCAGAGGCAGCTATTGTTCTGAATTATCTCTACAGGCACACTTCCCTTCAATCTAATGTTAATTACAACATGGTGGGAATTCTTGATGGACGGCCTAAATTAATGGGTCTAAGGGACTTGCTTCAGGCTTTCCTAGATTTTAGATGCTCAGTTGTTG

Ace file of the UniGene uagpf_v2_unigene41282

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29326	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE	-	-	74%
FL-Next	sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana.	-	-	75%
Blast2go	dna gyrase subunit a	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	DNA topoisomerase activity	GO:0003916	Molecular Function	84%
Blast2go	nucleoid	GO:0009295	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA gyrase, subunit A	IPR005743	-	-
Sma3	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel	IPR006691	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5YLB5

Fln msg: Distance to subject end: 489 aas, your sequence is shorter than subject: 87 - 935

Fln protein: RRDLGCHSKALDSVSDIRDESDRTGMRIVLELKKGSEAAIVLNYLYRHTSLQSNVNYNMVGILDGRPKLMGLRDLLQAFLDFRCSVV

Protein Length: 88

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGCTTTGGATAGTGTTAGCGACATACGAGATGAAAGTGACCGTACAGGGATGCGAATAGTACTGGAGTTGAAAAAAGGTTCAGAGGCAGCTATTGTTCTGAATTATCTCTACAGGCACACTTCCCTTCAATCTAATGTTAATTACAACATGGTGGGAATTCTTGATGGACGGCCTAAATTAATGGGTCTAAGGGACTTGCTTCAGGCTTTCCTAGATTTTAGATGCTCAGTTGTTG

Fln Alignment:

uagpf_mira_rep_c39517___SKALDSVSDIRDESDRTGMRIVLELKKGSEAAIVLNYLYRHTSLQSNVNYNMVGILDGRPKLMGLRDLLQAFLDFRCSVV
Q5YLB5________________NKILEGVSDIRDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQAFLDFRCSVV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain