SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41237

Length: 338 nt

UniGene Fasta

>uagpf_v2_unigene41237
CGTCGTGACCTTGGCTGTCACTCAATTGGTATTGGCTGATCCTTCTGGGCGCATATTGTATCACTGGCAACCTGCAGAGCCAATTAGTGGAGGAAATAGCAATAATGGCAGTCCAAAGAAGCAGCAGCCACATCCACCCTATGGCGCTCAGTCACCCTCTAGTGGCTCCGGGACTCTTCATTCTTCTGATTGCGGGCCTGCATGCTCAAAGAGGTGTTCGGCTACCCACCATTTGAATGCGTGCATGTATTTCTGTGAATATTGCTGTGCCAGATGCCTGTGTGTTCCACCAGGGACTTATGGCAATAACAGTCCTGCCCTTGCTACAACACATGACG

Ace file of the UniGene uagpf_v2_unigene41237

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33681	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin induced protein (Fragment) n=5 Tax=Sonneratia RepID=A9XNT2_9MYRT	-	-	3.0e-20	69%
FL-Next	tr=Gasa5 like protein; Pinus pinaster (Maritime pine).	-	-	0.0	70%
Blast2go	gibberellin induced protein	-	-	1.16866e-25	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL6

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, W2: There is no M at the beginning,

Fln protein: VVTLAVTQLVLADPSGRILYHWQPAEPISGGNSNNGSPKKQQPHPPYGAQSPSSGSGTLHSSDCGPACSKRCSATHHLNACMYFCEYCCARCLCVPPGTYGNNSPALATTHD

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGGTATTGGCTGATCCTTCTGGGCGCATATTGTATCACTGGCAACCTGCAGAGCCAATTAGTGGAGGAAATAGCAATAATGGCAGTCCAAAGAAGCAGCAGCCACATCCACCCTATGGCGCTCAGTCACCCTCTAGTGGCTCCGGGACTCTTCATTCTTCTGATTGCGGGCCTGCATGCTCAAAGAGGTGTTCGGCTACCCACCATTTGAATGCGTGCATGTATTTCTGTGAATATTGCTGTGCCAGATGCCTGTGTGTTCCACCAGGGACTTATGGCAATAACAGTCCTGCCCTTGCTACAACACATGACG

Fln Alignment:

uagpf_mira_rep_c39449___DCGPACSKRCSATHHLNACMYFCEYCCARCLCVPPGTYGN
F4MKL6________________ECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain