SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene41026

Length: 258 nt

UniGene Fasta

>uagpf_v2_unigene41026
CGTCGTGACCTTGGCTGTCACTCATTTCAATATAGACCAACCTGGTTCAGATCAAGATATGTTGGAAGAGGTTTCAACTTTGCAGGAAACATCTATTGTGGACTTCAAGCGTCTTAAGGAATTGACTTATTTGACTGAAAAGGGGTCTTCACAGATGGGTTGCCTTATGAAGCAGTGGTAGGCTAGGCAGGCAAATGCTTTCCGTCTTCTTAATGAAGAACTTGACATATTAAATAAACAAAGCAAGAAGCTGAACTT

Ace file of the UniGene uagpf_v2_unigene41026

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72033	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sensor histidine kinase, putative n=1 Tax=Ricinus communis RepID=B9RNQ2_RICCO	-	-	5.0e-16	55%
FL-Next	sp=Histidine kinase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Blast2go	histidine kinase cytokinin receptor	-	-	4.68925e-23	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histidine kinase.	EC:2.7.13.3	-	4.68925e-23	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	4.68925e-23	69%
Blast2go	root development	GO:0048364	Biological Process	4.68925e-23	69%
Blast2go	cellular response to nitric oxide	GO:0071732	Biological Process	4.68925e-23	69%
Blast2go	cellular response to molecule of bacterial origin	GO:0071219	Biological Process	4.68925e-23	69%
Blast2go	cellular response to hydrogen peroxide	GO:0070301	Biological Process	4.68925e-23	69%
Blast2go	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	4.68925e-23	69%
Blast2go	protein histidine kinase activity	GO:0004673	Molecular Function	4.68925e-23	69%
Blast2go	vacuole	GO:0005773	Cellular Component	4.68925e-23	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.68925e-23	69%
Blast2go	regulation of stomatal closure	GO:0090333	Biological Process	4.68925e-23	69%

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q3S4A7

Fln msg: Distance to subject end: 812 aas, your sequence is shorter than subject: 85 - 922

Fln protein: VVTLAVTHFNIDQPGSDQDMLEEVSTLQETSIVDFKRLKELTYLTEKGSSQMGCLMKQW*ARQANAFRLLNEELDILNKQSKKLN

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCAATATAGACCAACCTGGTTCAGATCAAGATATGTTGGAAGAGGTTTCAACTTTGCAGGAAACATCTATTGTGGACTTCAAGCGTCTTAAGGAATTGACTTATTTGACTGAAAAGGGGTCTTCACAGATGGGTTGCCTTATGAAGCAGTGGTAGGCTAGGCAGGCAAATGCTTTCCGTCTTCTTAATGAAGAACTTGACATATTAAATAAACAAAGCAAGAAGCTGAACTT

Fln Alignment:

uagpf_mira_rep_c39022___VVTLAVTHFNIDQPGSDQDMLEEVSTLQETSIVDFKRLKELTYLTEKGSSQMGCLMKQW*ARQANAFRLLNEELDILNKQSKK
Q3S4A7________________VGTEADKQFNVEKPAGDLDTLKEV-TIETRTIADMTRLPNLLNSTHQGSSQLTNLVKQWEYMQDNAVRLLKEELKNLDRQREE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain