SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40998

Length: 355 nt

UniGene Fasta

>uagpf_v2_unigene40998
CGTCGTGACCTTGGCTGTCACTCAGACCAGTGGCAAAGTATTTACACGTTTTCCTCCAGAGCCAAATGGATATCTTCACATTGGCCATGCCAAGGCCATGTTTGTGAGCTTTGGCTTAGCCAAAGAAAGAAATGGGTTTTGCTATTTAAGATTTGATGACACAAATCCAGAGGCTGAGAAAAAGGAATATATTGACCATATTCAAGACATCGTGAATTGGATGGGCTGGGGCCCTTTCAAGATAACCTATAGCAGTGACTATTTCCAAGAGCTTTATGATCTAGCAGTGGAGTTGATTAAACGTGGTCATGCATATGTTGATCATCAGACACCTGAAGAAGTAAAGGAGTATAGG

Ace file of the UniGene uagpf_v2_unigene40998

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18180	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Glutaminyl-tRNA synthetase; AltName: Full=Glutamine--tRNA ligase; Short=GlnRS emb\|CAA62901.1\| tRNA-glutamine synthetase [Lupinus luteus]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	glutaminyl-trna synthetase	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	84%
Blast2go	ovule development	GO:0048481	Biological Process	84%
Blast2go	tRNA aminoacylation	GO:0043039	Biological Process	84%
Blast2go	ligase activity	GO:0016874	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib	IPR004514	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal	IPR007639	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2	IPR007638	-	-
Sma3	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ22

Fln msg: Distance to subject end: 419 aas, your sequence is shorter than subject: 118 - 832

Fln protein: VVTLAVTQTSGKVFTRFPPEPNGYLHIGHAKAMFVSFGLAKERNGFCYLRFDDTNPEAEKKEYIDHIQDIVNWMGWGPFKITYSSDYFQELYDLAVELIKRGHAYVDHQTPEEVKEYR

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACCAGTGGCAAAGTATTTACACGTTTTCCTCCAGAGCCAAATGGATATCTTCACATTGGCCATGCCAAGGCCATGTTTGTGAGCTTTGGCTTAGCCAAAGAAAGAAATGGGTTTTGCTATTTAAGATTTGATGACACAAATCCAGAGGCTGAGAAAAAGGAATATATTGACCATATTCAAGACATCGTGAATTGGATGGGCTGGGGCCCTTTCAAGATAACCTATAGCAGTGACTATTTCCAAGAGCTTTATGATCTAGCAGTGGAGTTGATTAAACGTGGTCATGCATATGTTGATCATCAGACACCTGAAGAAGTAAAGGAGTATAGG

Fln Alignment:

uagpf_mira_c38963___TSGKVFTRFPPEPNGYLHIGHAKAMFVSFGLAKERNGFCYLRFDDTNPEAEKKEYIDHIQDIVNWMGWGPFKITYSSDYFQELYDLAVELIKRGHAYVDHQTPEEVKEYR
B8LQ22________________TGGKVFTRFPPEPNGYLHIGHAKAMFVSFGLAKERNGYCYLRFDDTNPEAEKMEYIDHIQEIVNWMGWGPFKITYSSDYFQELYDLAVELIKRGHAYVDHQTAEEVKEYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain