SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40980

Length: 350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene40980
GAGCGACAGCAGATGTACAGGTATACTAGACTTGATTCATAATGATGTTAGTGGTCGTATGTCTCACATGTCTTTGGGTGGTTATGAGTATTATGTTATATTCATTGATGACTACTCTAGGAGGACTTGGATATAATTCCTGAGGACCAAGGGTGAGGTCTTCAAAGCTCTTGTGGAAAAATAGATAGGTAGGAAGATTTGGGTCTCGAGGTCAGACAATGGTGGTGAGTACACCGATGGTGGGTTTTCTGACTTCTGTGCACAGGAGGGCATTAGGAGAGAGTTCACGGTTCCTTACAACCCCCAACAGAATGAGGTGTTTGAAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene40980 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene66756	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GK15001 gene product from transcript GK15001-RA	-	-	2.0e-20	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	gag-pol polyprotein	-	-	5.69106e-27	64%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 160 aas, your sequence is shorter than subject: 116 - 407

Fln protein: SDSRCTGILDLIHNDVSGRMSHMSLGGYEYYVIFIDDYSRRTWI*FLRTKGEVFKALVEK*IGRKIWVSRSDNGGEYTDGGFSDFCAQEGIRREFTVPYNPQQNEVFEMSDSQGHD

Protein Length: 117

Fln nts: GAGCGACAGCAGATGTACAGGTATACTAGACTTGATTCATAATGATGTTAGTGGTCGTATGTCTCACATGTCTTTGGGTGGTTATGAGTATTATGTTATATTCATTGATGACTACTCTAGGAGGACTTGGATATAATTCCTGAGGACCAAGGGTGAGGTCTTCAAAGCTCTTGTGGAAAAATAGATAGGTAGGAAGATTTGGGTCTCGAGGTCAGACAATGGTGGTGAGTACACCGATGGTGGGTTTTCTGACTTCTGTGCACAGGAGGGCATTAGGAGAGAGTTCACGGTTCCTTACAACCCCCAACAGAATGAGGTGTTTGAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c38923___LDLIHNDVSGRMSHMSLGGYEYYVIFIDDYSRRTWI*FLRTKGEVF------KALVEK*IGRKIWVSRSDNGGEYTDGGFSDFCAQEGIRREFTVPYNPQQNEVFE
B8LKX7________________LHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain