SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40900

Length: 244 nt

UniGene Fasta

>uagpf_v2_unigene40900
CGTCGTGACCTTGGCTGTCACTCAATATTGTATATGAATCTGTTGGAGGAGAAATGTTTAATACATGCTTAAATGCCCTTGCAGTTCATGGTCATCTTGTTGTTATCGGGATGATCTCTCAGTATCAGGGAGAGAGCGGATGGAAGCCATCAAACTATACTGGTCTTTGTGAGAAGATTCTCTCTAAGAGTCAATCGGTGGTTGGCTTTTTCTTAATGGATTACCCTCTATTTATGGCGTGCAC

Ace file of the UniGene uagpf_v2_unigene40900

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20782	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00106, adh_short, short chain dehydrogenase	-	-	9.0e-23	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	arp protein	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	78%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	78%
Blast2go	response to salt stress	GO:0009651	Biological Process	78%
Blast2go	catalytic activity	GO:0003824	Molecular Function	78%
Blast2go	peroxisome	GO:0005777	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0J2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 49 aas, your sequence is shorter than subject: 80 - 344

Fln protein: S*PWLSLNIVYESVGGEMFNTCLNALAVHGHLVVIGMISQYQGESGWKPSNYTGLCEKILSKSQSVVGFFLMDYPLFMAC

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTGTATATGAATCTGTTGGAGGAGAAATGTTTAATACATGCTTAAATGCCCTTGCAGTTCATGGTCATCTTGTTGTTATCGGGATGATCTCTCAGTATCAGGGAGAGAGCGGATGGAAGCCATCAAACTATACTGGTCTTTGTGAGAAGATTCTCTCTAAGAGTCAATCGGTGGTTGGCTTTTTCTTAATGGATTACCCTCTATTTATGGCGTGCAC

Fln Alignment:

uagpf_mira_c38785___LNIVYESVGGEMFNTCLNALAVHGHLVVIGMISQYQGESGWKPSNYTGLCEKILSKSQSVVGFFLMDY
A9P0J2________________IDIYFENVGSKMLEAVLENMNLHGRIAACGMISEYNLEEGQGIRNIS----RVISKRIKIQGFIIHDY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
18			33	66	0.997452
21		66	33		0.997454
23		66		33	0.997454
24	66		33		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain