SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40819

Length: 351 nt

UniGene Fasta

>uagpf_v2_unigene40819
CGTCGTGACCTTGGCTGTCACTCAGGTCTGGCCGAGCGTAAGCAGGAATTCGAGGCTAAGAGTAGTGAGATTGAGCGACTGACGAAAGAGAATGAGGTCCTCAAGCAGCAGGTGGAGTCACAACATGTGAATATGAGGGATTATGAGAAGATGAGCAGAGAGTGCCACGCCATTGAGCTCGACATTCAGGCTGCTGAGACTGCTAGGAATGAGTGGGAGGAGAAGGCTTGGGATATTGAGGTATCTGCAAGCAAGAAATTGAAAGAGCTTGAAGCGGCAGTCGATCGTTACAACCAGGAAATCATCAGGTTGAAGCTTGGTAGTTCATTTGAATTCAAGCTGAATTCTAGA

Ace file of the UniGene uagpf_v2_unigene40819

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11204	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Hec1 protein, putative n=1 Tax=Ricinus communis RepID=B9T7Y6_RICCO	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	47%
Blast2go	kinetochore protein ndc80 homolog	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	-
Sma3	Kinetochore protein Ndc80	IPR005550	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H969

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 117 - 571

Fln protein: RRDLGCHSGLAERKQEFEAKSSEIERLTKENEVLKQQVESQHVNMRDYEKMSRECHAIELDIQAAETARNEWEEKAWDIEVSASKKLKELEAAVDRYNQEIIRLKLGSSFEFKLNSR

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTGGCCGAGCGTAAGCAGGAATTCGAGGCTAAGAGTAGTGAGATTGAGCGACTGACGAAAGAGAATGAGGTCCTCAAGCAGCAGGTGGAGTCACAACATGTGAATATGAGGGATTATGAGAAGATGAGCAGAGAGTGCCACGCCATTGAGCTCGACATTCAGGCTGCTGAGACTGCTAGGAATGAGTGGGAGGAGAAGGCTTGGGATATTGAGGTATCTGCAAGCAAGAAATTGAAAGAGCTTGAAGCGGCAGTCGATCGTTACAACCAGGAAATCATCAGGTTGAAGCTTGGTAGTTCATTTGAATTCAAGCTGAATTCTAGA

Fln Alignment:

uagpf_mira_rep_c38601___LAERKQEFEAKSSEIERLTKENEVLKQQVESQHVNMRDYEKMSRECHAIELDIQAAETARNEWEEKAWDIEVSASKKLKELEAAVDRYNQEIIRLKLGSSFEFKLNSR
F6H969________________LEEKEKELGVKVEENNRICEENEELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEALSIECNQALRRLKLGNGLQYVLNAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain