SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40792

Length: 231 nt

UniGene Fasta

>uagpf_v2_unigene40792
CGTCGTGACCTTGGCTGTCACTCATTTTTGATCTCAATGGAATAGTTGAGATGTTCAACTCTTACAGGAAGAAAAGCTATTGGTCTTTACTGCAACACCCACCTCAAGGACTAGAGATTTCCATTGTACGTGCAGAGAACAGTGACAGATGGAATTCTGCGGTACTTGCTCAGTTAGAGAGTGTTGCAAATAAAGAGCAAAGTGCCGACAATGGAAAAGTCTTCTATCATG

Ace file of the UniGene uagpf_v2_unigene40792

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1000	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] emb\|CAB39627.1\| putative protein [Arabidopsis thaliana] emb\|CAB78126.1\| putative protein [Arabidopsis thaliana] gb\|AAM65982.1\| unknown [Arabidopsis thaliana] gb\|AEE82831.1\| hydrolase, alpha/	-	-	2.00386e-43	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	abhydrolase domain-containing protein 11-like	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	71%
Blast2go	metabolic process	GO:0008152	Biological Process	71%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	71%
Blast2go	ATP binding	GO:0005524	Molecular Function	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 29 aas, your sequence is shorter than subject: 76 - 401

Fln protein: S*PWLSLIFDLNGIVEMFNSYRKKSYWSLLQHPPQGLEISIVRAENSDRWNSAVLAQLESVANKEQSADNGKVFYH

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGATCTCAATGGAATAGTTGAGATGTTCAACTCTTACAGGAAGAAAAGCTATTGGTCTTTACTGCAACACCCACCTCAAGGACTAGAGATTTCCATTGTACGTGCAGAGAACAGTGACAGATGGAATTCTGCGGTACTTGCTCAGTTAGAGAGTGTTGCAAATAAAGAGCAAAGTGCCGACAATGGAAAAGTCTTCTATCATG

Fln Alignment:

uagpf_mira_rep_c38551___SLIFDLNGIVEMFNSYRKKSYWSLLQHPPQGLEISIVRAENS-DRW
B8LRU0________________SWIFDLEGIAEMYTSYEDTNLWKVVENVPQGVHVNFLRAERSLHRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain