SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40745

Length: 413 nt

UniGene Fasta

>uagpf_v2_unigene40745
CGTCGTGACCTTGGCTGTCACTCACCTTTTGTGCCACTGGAAGTATGGGATTTAAGAGCAATCTCTCAGCAGGAGAAATAGTGGAGCAGCTGGTTCATGCATCTCGCATATCACAAATTCGCAATGTTGTTTTTATGGGAATGGGAGAACCTCTAAATAATTACAAGTCAGTTGTAGAAGCTGTTCGGTCTATGACAGGACACTGTTTCCAGCTAGCCCCACGGCATATCACTATCTCAACAGTGGGGGTTATTCACTGCATTAATAACTTAAAGAATGATTTGCCAAATGTAAATCTTGCGGTATCGCTTCATGCACCATTGCAAGAGGTCCGTTGTCAGATAATGCCAGCGGCACGTGCTTTTCCTCTTGGAAAGCTAATGGATGCACTACGTGCTTATCAAGAACACAGT

Ace file of the UniGene uagpf_v2_unigene40745

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8310	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	radical SAM domain-containing protein [Arabidopsis thaliana] gb\|AAO41968.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50541.1\| unknown protein [Arabidopsis thaliana] gb\|AEE76269.1\| radical SAM domain-containing protein [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ribosomal rna large subunit methyltransferase n	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	RNA methylation	GO:0001510	Biological Process	78%
Blast2go	rRNA processing	GO:0006364	Biological Process	78%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	78%
Blast2go	RNA methyltransferase activity	GO:0008173	Molecular Function	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal RNA large subunit methyltransferase RlmN;	IPR004383	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A992

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 122 aas, your sequence is shorter than subject: 137 - 384

Fln protein: S*PWLSLTFCATGSMGFKSNLSAGEIVEQLVHASRISQIRNVVFMGMGEPLNNYKSVVEAVRSMTGHCFQLAPRHITISTVGVIHCINNLKNDLPNVNLAVSLHAPLQEVRCQIMPAARAFPLGKLMDALRAYQEHS

Protein Length: 138

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTTTTGTGCCACTGGAAGTATGGGATTTAAGAGCAATCTCTCAGCAGGAGAAATAGTGGAGCAGCTGGTTCATGCATCTCGCATATCACAAATTCGCAATGTTGTTTTTATGGGAATGGGAGAACCTCTAAATAATTACAAGTCAGTTGTAGAAGCTGTTCGGTCTATGACAGGACACTGTTTCCAGCTAGCCCCACGGCATATCACTATCTCAACAGTGGGGGTTATTCACTGCATTAATAACTTAAAGAATGATTTGCCAAATGTAAATCTTGCGGTATCGCTTCATGCACCATTGCAAGAGGTCCGTTGTCAGATAATGCCAGCGGCACGTGCTTTTCCTCTTGGAAAGCTAATGGATGCACTACGTGCTTATCAAGAACACAGT

Fln Alignment:

uagpf_mira_rep_c38444___LSLTFCATGSMGFKSNLSAGEIVEQLVHASRISQIRNVVFMGMGEPLNNYKSVVEAVRSMTGHCFQLAPRHITISTVGVIHCINNLKNDLPNVNLAVSLHAPLQEVRCQIMPAARAFPLGKLMDALRAYQEHS
D5A992________________MGCTFCATGSMGFKSNLSVGEIVEQLVHAARISQIRNVVFMGMGEPLNNYKSVVEAVRSMIGHCFQLAPRHITISAVGVIHCINNLKYDLPNVNLAVSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain