SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40737

Length: 298 nt

UniGene Fasta

>uagpf_v2_unigene40737
CGTCGTGACCTTGGCTGTCACTCAATTTGTTTCGGTGTATTCTCAATTAGACGTTGAGCTCTCTCAAATCAAGAGAGAAAATAATAAAGAAATAATGGAAGCAGAGAACAACAACAACAACAAGAAGCTGCCAAACCCTATACAAGCGGCTTCCGCGTCGGCCATGGCGTTCACTGTTGGAGCGCTTGTGCCGTTGCTGTCGGCGGCTTTCATAAAAGCTCACTGGGTGAGAATGGGTGTCTTGGTGGGCGCATCCTCTGTGACGCTGGCGGGCTTTGGAGCCGTGGGGGCTTATGTT

Ace file of the UniGene uagpf_v2_unigene40737

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10883	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulin-like protein n=2 Tax=Arabidopsis RepID=Q9M2C3_ARATH	-	-	5.0e-25	48%
FL-Next	sp=Vacuolar iron transporter homolog 2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	46%
Blast2go	nodulin-like protein	-	-	8.78575e-36	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to iron ion	GO:0010039	Biological Process	8.78575e-36	74%
Blast2go	membrane	GO:0016020	Cellular Component	8.78575e-36	74%
Blast2go	plastid	GO:0009536	Cellular Component	8.78575e-36	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF125, transmembrane	IPR008217	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B7F138

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 99 - 189

Fln protein: VVTLAVTQFVSVYSQLDVELSQIKRENNKEIMEAENNNNNKKLPNPIQAASASAMAFTVGALVPLLSAAFIKAHWVRMGVLVGASSVTLAGFGAVGAYV

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTTTCGGTGTATTCTCAATTAGACGTTGAGCTCTCTCAAATCAAGAGAGAAAATAATAAAGAAATAATGGAAGCAGAGAACAACAACAACAACAAGAAGCTGCCAAACCCTATACAAGCGGCTTCCGCGTCGGCCATGGCGTTCACTGTTGGAGCGCTTGTGCCGTTGCTGTCGGCGGCTTTCATAAAAGCTCACTGGGTGAGAATGGGTGTCTTGGTGGGCGCATCCTCTGTGACGCTGGCGGGCTTTGGAGCCGTGGGGGCTTATGTT

Fln Alignment:

uagpf_mira_rep_c38434___TLAVTQFVSVYSQLDVELSQIKRXXXXXXXXXXXXXXXXXXXXPIQAASASAMAFTVGALVPLLSAAFIKAHWVRMGVLVGASSVTLAGFGAVGAYV
B7F138________________SMAIGEFVSVYAQYDIEVTQIERDGDIDGADAAAAREKLPS--PTQAAFASALAFAIGGLLPLLTSGFIKPWGPRVGVVCAASSVGLAGFGAAGGYL

SSRs (tot: 1)

Start position	End position	Sequence	Length
107	123	AAC AAC AAC AAC AAC AA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain