SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40565

Length: 377 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene40565
ACTGCAACTGAACCAATGGCATCCTGGCATTGTCATTTGGTTTAGTCTTCTGATTCGTAGTCTTATGATGAGGCTGCTAGGCATCCCTCTTGGGAGTCCACCATGGAGGACAAGTACAACTCCCTCCTCAAGAACCAGACCTTGGATCTGGTACCCATTCCTTCCGGAAGGAAACTTGTTAGATGCAATTGGGTCTATAGGACCAAGAGTACTACAGATAGGCAAATCATGAGACCGAAAACTAGGCTAGTAGCCAAAGGCTTCTAGTAAGTGCATCGCATTGAGTATGATGAGACCTTTGCTCCATTAGCGAAGATGGATTCCATACGACTTGCACTTTCCATTGTTGTTGCTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene40565 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene68251	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=2 Tax=Oryza sativa Japonica Group RepID=Q851Y3_ORYSJ	-	-	4.0e-19	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	retrotransposon unclassified	-	-	1.2164e-22	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 271 aas, your sequence is shorter than subject: 86 - 363

Fln protein: MEDKYNSLLKNQTLDLVPIPSGRKLVRCNWVYRTKSTTDRQIMRPKTRLVAKGF**VHRIEYDETFAPLAKMDSIRLALSIVVAE*

Protein Length: 87

Fln nts: ACTGCAACTGAACCAATGGCATCCTGGCATTGTCATTTGGTTTAGTCTTCTGATTCGTAGTCTTATGATGAGGCTGCTAGGCATCCCTCTTGGGAGTCCACC_-_ATGGAGGACAAGTACAACTCCCTCCTCAAGAACCAGACCTTGGATCTGGTACCCATTCCTTCCGGAAGGAAACTTGTTAGATGCAATTGGGTCTATAGGACCAAGAGTACTACAGATAGGCAAATCATGAGACCGAAAACTAGGCTAGTAGCCAAAGGCTTCTAGTAAGTGCATCGCATTGAGTATGATGAGACCTTTGCTCCATTAGCGAAGATGGATTCCATACGACTTGCACTTTCCATTGTTGTTGCTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c38112___MEDKYNSLLKNQTLDLVPIPSGRKLVRCNWVYRTKSTTDRQIMRPKTRLVAKGF**VHRIEYDETFAPLAKMDSIRLALSI
B8LKV8________________MNKEMESIKKNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain