SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40547

Length: 211 nt

UniGene Fasta

>uagpf_v2_unigene40547
ATACAAGCAAGTTGAAGTACTTGACCGTCGTGACCTTGGCTGTCACTCATTTGAGGAATGTTTCTCTTTCATTGATGAAGCTAAGAGGGAGGGAGGTGGTGTATTGGTCCATTGCTTTGCTGGAAGATCAAGAAGTGTCACAGTTATCGTTGCATATTTGATGAGAACTCATCATATGAGTCTGTCTGAAGCTTTGGAGCTTGTCAGGAGT

Ace file of the UniGene uagpf_v2_unigene40547

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene976	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	dual specificity protein phosphatase 1 [Arabidopsis thaliana] emb\|CAA77232.1\| DsPTP1 protein [Arabidopsis thaliana] gb\|AEE76784.1\| dual specificity protein phosphatase 1 [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	dual specificity protein phosphatase 1	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	76%
Blast2go	response to ozone	GO:0010193	Biological Process	76%
Blast2go	intracellular protein kinase cascade	GO:0007243	Biological Process	76%
Blast2go	negative regulation of MAP kinase activity	GO:0043407	Biological Process	76%
Blast2go	response to stress	GO:0006950	Biological Process	76%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	76%
Blast2go	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	76%
Blast2go	MAP kinase phosphatase activity	GO:0033549	Molecular Function	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	Dual specificity protein phosphatase 12	IPR016278	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7T6

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 70 - 169

Fln protein: YKQVEVLDRRDLGCHSFEECFSFIDEAKREGGGVLVHCFAGRSRSVTVIVAYLMRTHHMSLSEALELVRS

Protein Length: 71

Fln nts: ATACAAGCAAGTTGAAGTACTTGACCGTCGTGACCTTGGCTGTCACTCATTTGAGGAATGTTTCTCTTTCATTGATGAAGCTAAGAGGGAGGGAGGTGGTGTATTGGTCCATTGCTTTGCTGGAAGATCAAGAAGTGTCACAGTTATCGTTGCATATTTGATGAGAACTCATCATATGAGTCTGTCTGAAGCTTTGGAGCTTGTCAGGAGT

Fln Alignment:

uagpf_mira_rep_c38081___YKQVEVLDRRDLGC-HSFEECFSFIDEAKREGGGVLVHCFAGRSRSVTVIVAYLMRTHHMSLSEALELVRS
D5A7T6________________YMQVEVLDSVNTNLVQHFEECFSFIDEAKREGGGVLVHCFAGRSRSVTVIVAYLMKTHQMSLSEALELVRS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
26	33	66			0.997476
36	33	66			0.997476
51			33	66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain