SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40439

Length: 325 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene40439
ACCACAGGGTTCACACCCTATGAGCTAGTCTATGGGAAGAAGGCTCTGTTGTCAATAGAATTTGAATATAACACCTTAAGGATGGCAGCTCAACTGAACCTACATCTCAGCCATGCACAAAAAGAAATATTGCTTCAGCTAAATGGATTGGATGAGCAGAGATTACAGGCCCTTCTCCACTCAGAGGTAGTCCAACTTCAAAGGAAAATATGGCATGACAGACACCTCAAAGAAAAACAATTCCAGCAAGGAGATTGGGCGCTGCTATAAGATTCAAGATATAAGAATTTCAAGGACAAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene40439 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene68369	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F7F22.15 n=2 Tax=Arabidopsis thaliana RepID=Q9SHM5_ARATH	-	-	9.0e-13	40%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	39%
Blast2go	retroelement pol poly	-	-	4.40689e-15	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B4E9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 38 aas, your sequence is shorter than subject: 90 - 384

Fln protein: TTGFTPYELVYGKKALLSIEFEYNTLRMAAQLNLHLSHAQKEILLQLNGLDEQRLQALLHSEVVQLQRKIWHDRHLKEKQFQQGDWALL*

Protein Length: 91

Fln nts: ACCACAGGGTTCACACCCTATGAGCTAGTCTATGGGAAGAAGGCTCTGTTGTCAATAGAATTTGAATATAACACCTTAAGGATGGCAGCTCAACTGAACCTACATCTCAGCCATGCACAAAAAGAAATATTGCTTCAGCTAAATGGATTGGATGAGCAGAGATTACAGGCCCTTCTCCACTCAGAGGTAGTCCAACTTCAAAGGAAAATATGGCATGACAGACACCTCAAAGAAAAACAATTCCAGCAAGGAGATTGGGCGCTGCTATAAGATTCAAGATATAAGAATTTCAAGGACAAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c37898___GFTPYELVYGKKALLSIEFEYNTLRMAAQLNLHLSHAQKEILLQLNGLDEQRLQALLHSEVVQLQRKIWHDRHLKEKQFQQGDWALL*DSRYKNFKDKL
A5B4E9________________GMSPYRLVYGKVCHLPVEVQYKALWAIKTLNMDLNRANMKRFLYLNGMEELRNDAYINSNIAKQRLKRWHDQLVSRKEFQKGQKVLLYDSKLHIFSGKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain