SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40416

Length: 235 nt

UniGene Fasta

>uagpf_v2_unigene40416
CGTCGTGACCTTGGCTGTCACTCAGCAGATTCTGAATCATGTAAATGGAGGTTGTGTTATAAGTTTCAAGATGGACCAATGGCGGCATTGGATATTCAATTTGGTAATTGTGTGTTGGGATTGAAATTGGTGGTTGCATATGCTGATGGCCATGTAAAGATCTATGAATCACTTGACACATTGGAGTTAAAGCGATGGCAGCTTGAGGCTGAATTTCAAATGTAAGTAATGTGGT

Ace file of the UniGene uagpf_v2_unigene40416

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25431	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAK44037.1\|AF370222_1 unknown protein [Arabidopsis thaliana] gb\|AAL15222.1\| unknown protein [Arabidopsis thaliana] gb\|AEE34229.1\| transducin/WD-40 repeat-containing protein [Arabidopsis	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	54%
Blast2go	nucleoporin seh1-like	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	69%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TVD9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 166 aas, your sequence is shorter than subject: 75 - 325

Fln protein: RRDLGCHSADSESCKWRLCYKFQDGPMAALDIQFGNCVLGLKLVVAYADGHVKIYESLDTLELKRWQLEAEFQM*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGATTCTGAATCATGTAAATGGAGGTTGTGTTATAAGTTTCAAGATGGACCAATGGCGGCATTGGATATTCAATTTGGTAATTGTGTGTTGGGATTGAAATTGGTGGTTGCATATGCTGATGGCCATGTAAAGATCTATGAATCACTTGACACATTGGAGTTAAAGCGATGGCAGCTTGAGGCTGAATTTCAAATGTAAGTAATGTGGT

Fln Alignment:

uagpf_mira_rep_c37850___DSESCKWRLCYKFQDGPMAALDIQFGNCVLGLKLVVAYADGHVKIYESLDTLELKRWQLEAEFQ
D7TVD9________________DAQPLQWKLCKSFGSNSNKVLDVQFGVSPTSLKMVSAYSDGHVKVYELLDPLELKSWQLQAEFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain