SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40394

Length: 253 nt

UniGene Fasta

>uagpf_v2_unigene40394
CGTCGTGACCTTGGCTGTCACTCAATTATTGGGCGTCGTGACCTTGGCTGTCACTCATGTTTTGGAATTTTCCCGAGATCGTAAGATGATGAGTGTTCTTTGTAGTCGTAAGCAACAAGAAATTATGTTTTCGAAAGGTGCTCCAGAGAGTATTATTGCTCGATGCTCAAATGTTCTTTGTAATGATGATGGCTCTGCTATACCTCTAACTCTTGATGTTCGATCAGAGTTGGAGAACAGGTTCCAGAGCCTT

Ace file of the UniGene uagpf_v2_unigene40394

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19546	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Cation-transporting atpase, putative n=1 Tax=Ricinus communis RepID=B9R6Y5_RICCO	-	-	81%
FL-Next	sp=Calcium-transporting ATPase 3, endoplasmic reticulum-type; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	endoplasmic reticulum	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	87%
Blast2go	Manganese-transporting ATPase.	EC:3.6.3.35	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	87%
Blast2go	manganese ion transport	GO:0006828	Biological Process	87%
Blast2go	manganese ion homeostasis	GO:0055071	Biological Process	87%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	87%
Blast2go	manganese-transporting ATPase activity	GO:0015410	Molecular Function	87%
Blast2go	endomembrane system	GO:0012505	Cellular Component	87%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SY55

Fln msg: Distance to subject end: 448 aas, your sequence is shorter than subject: 84 - 998

Fln protein: VVTLAVTQLLGVVTLAVTHVLEFSRDRKMMSVLCSRKQQEIMFSKGAPESIIARCSNVLCNDDGSAIPLTLDVRSELENRFQSL

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTGGGCGTCGTGACCTTGGCTGTCACTCATGTTTTGGAATTTTCCCGAGATCGTAAGATGATGAGTGTTCTTTGTAGTCGTAAGCAACAAGAAATTATGTTTTCGAAAGGTGCTCCAGAGAGTATTATTGCTCGATGCTCAAATGTTCTTTGTAATGATGATGGCTCTGCTATACCTCTAACTCTTGATGTTCGATCAGAGTTGGAGAACAGGTTCCAGAGCCTT

Fln Alignment:

uagpf_mira_c37809___HVLEFSRDRKMMSVLCSRKQQEIMFSKGAPESIIARCSNVLCNDDGSAIPLTLDVRSELENRFQS
Q9SY55________________YVLEFTRDRKMMSVLCSHKQMDVMFSKGAPESIIARCNKILCNGDGSVVPLTAAGRAELESRFYS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
34	33	66			0.997476
38	33		66		0.997476
40		33	66		0.997476
43	33	66			0.997476
47	33		66		0.997461
48	33	66			0.997461
49	33			66	0.997461
50	33		66		0.997461
51	33			66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain