SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40330

Length: 329 nt

UniGene Fasta

>uagpf_v2_unigene40330
CGTCGTGACCTTGGCTGTCACTCATTTATAGTTTTTGTATTGTCGTGCATATAGGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGACGTATACATCGTTGGTTTTTTTATCTAGTTGAGATACTGCCCAACTATTGTTGATTTAGATTTACTGCATCTGATGCTGATTTAATTGGTAATTGCAGCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATG

Ace file of the UniGene uagpf_v2_unigene40330

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene68930	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nuclear poly(A) polymerase n=4 Tax=Arabidopsis thaliana RepID=O82312_ARATH	-	-	6.0e-17	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	poly polymerase 2	-	-	1.17765e-17	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	1.17765e-17	88%
Blast2go	protein binding	GO:0005515	Molecular Function	1.17765e-17	88%
Blast2go	nucleus	GO:0005634	Cellular Component	1.17765e-17	88%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF599	IPR006747	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: Separated hits, possible frame ERROR between 168 and 260, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 461 aas, your sequence is shorter than subject: 110 - 701

Fln protein: RRDLGCHSFIVFVLSCI*DFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQHFRTTLRCMKLWAKRRGLYSN

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATAGTTTTTGTATTGTCGTGCATATAGGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGCAGCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATG

Fln Alignment:

uagpf_mira_rep_c37683___DFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQHFRTTLRCMKLWAKRRGLYSN
C0PQ25________________DLDISQESVLYNVDEQTVRSLNGCRVNEQILRLVPNVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVEHFRTTLRCMKFWAKRRGVYSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain