SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene40275

Length: 233 nt

UniGene Fasta

>uagpf_v2_unigene40275
CGTCGTGACCTTGGCTGTCACTCAGACAAAGAGAAGACATGCTGCGGGACATGTTTCCAGAAAGTGGGCTTATGCCAGGAGCAGAGCGTTTAGTACGACATCTACATGAACATGGAGTACCTATGGCTGTGGGAACAAGCTCTCATAGGCGACATTATGAGCTGAAGACAACTAAACACAAAGATCTATTCTCATTGATGCATCATGTAGTTGTAGGCGATGATCCAGAAATC

Ace file of the UniGene uagpf_v2_unigene40275

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2633	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	glycerol-3-phosphatase 1 [Arabidopsis thaliana] gb\|AEE85121.1\| glycerol-3-phosphatase 1 [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	haloacid dehalogenase-like hydrolase domain-containing protein 1a	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	79%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 1	IPR006439	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A869

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 235 aas, your sequence is shorter than subject: 77 - 382

Fln protein: S*PWLSLRQREDMLRDMFPESGLMPGAERLVRHLHEHGVPMAVGTSSHRRHYELKTTKHKDLFSLMHHVVVGDDPEI

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACAAAGAGAAGACATGCTGCGGGACATGTTTCCAGAAAGTGGGCTTATGCCAGGAGCAGAGCGTTTAGTACGACATCTACATGAACATGGAGTACCTATGGCTGTGGGAACAAGCTCTCATAGGCGACATTATGAGCTGAAGACAACTAAACACAAAGATCTATTCTCATTGATGCATCATGTAGTTGTAGGCGATGATCCAGAAATC

Fln Alignment:

uagpf_mira_rep_c37577___DMFPESGLMPGAERLVRHLHEHGVPMAVGTSSHRRHYELKTTKHKDLFSLMHHVVVGDDPE
D5A869________________NMWCKAKPLPGAVRLIKHLHSHGVPMALASNSPRKNIEEKLFYQQGWKESFSVIIGGDEVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain